miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 160727 0.7 0.764578
Target:  5'- uGCUGCGUGUCGAuGCGCUggugccaggCGGUGCUCa -3'
miRNA:   3'- -UGAUGCGCGGUU-CGCGAa--------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 158087 0.66 0.936515
Target:  5'- cACUcaGCGCC--GCGCUgcgCGGCGgCCu -3'
miRNA:   3'- -UGAugCGCGGuuCGCGAa--GCUGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 157742 1.12 0.00261
Target:  5'- uACUACGCGCCAAGCGCUUCGACGCCCg -3'
miRNA:   3'- -UGAUGCGCGGUUCGCGAAGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 156423 0.69 0.817223
Target:  5'- uGCUGCGCgagcuguacGCCAAGaaaGCcgcgUCGACGUCg -3'
miRNA:   3'- -UGAUGCG---------CGGUUCg--CGa---AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 153868 0.7 0.800221
Target:  5'- ---cCGCGCCGAGCGg--CGACGUgCa -3'
miRNA:   3'- ugauGCGCGGUUCGCgaaGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 153767 0.78 0.35807
Target:  5'- ---uCGCGCCAGuGCGCcgUCGACGCCg -3'
miRNA:   3'- ugauGCGCGGUU-CGCGa-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 152096 0.7 0.755372
Target:  5'- aGCUACGUGCgCGAGCaCggCG-UGCCCa -3'
miRNA:   3'- -UGAUGCGCG-GUUCGcGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 149444 0.66 0.936515
Target:  5'- aGCU-CGUgGCC--GCGCUaUCGAUGCCUg -3'
miRNA:   3'- -UGAuGCG-CGGuuCGCGA-AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142415 0.7 0.755372
Target:  5'- cGCUcuuCGCGCCcaguGGCGUcggcgCGGCGUCCg -3'
miRNA:   3'- -UGAu--GCGCGGu---UCGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142348 0.67 0.898137
Target:  5'- --cGCGUGCUGGaCGC--CGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGUUcGCGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142134 0.68 0.878419
Target:  5'- ---cCGCGUCAugcuGGCGCUg-GACGCCg -3'
miRNA:   3'- ugauGCGCGGU----UCGCGAagCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 142056 0.66 0.941109
Target:  5'- gGCUACGCgucugGCCGAcGUGCUcaucaaacgcUCG-CGCCg -3'
miRNA:   3'- -UGAUGCG-----CGGUU-CGCGA----------AGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 141739 0.69 0.808797
Target:  5'- --cACGUGUUAGGUGCUaguccgcgguucUCGuCGCCCg -3'
miRNA:   3'- ugaUGCGCGGUUCGCGA------------AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 140801 0.7 0.791503
Target:  5'- --aGCGCGCacggcaaAAGCGaCUUUGugGCCg -3'
miRNA:   3'- ugaUGCGCGg------UUCGC-GAAGCugCGGg -5'
1606 3' -56.8 NC_001347.2 + 140331 0.66 0.941109
Target:  5'- gGCUGCGcCGC--GGgGCUgugCGAgGCCUg -3'
miRNA:   3'- -UGAUGC-GCGguUCgCGAa--GCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 138950 0.69 0.849288
Target:  5'- aACUAacCGCGCU-AGCGCcggUGGgGCCCg -3'
miRNA:   3'- -UGAU--GCGCGGuUCGCGaa-GCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 130298 0.67 0.915915
Target:  5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3'
miRNA:   3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 129496 0.68 0.856861
Target:  5'- --aGCGCGUCugcAGCGCggCGcCGCCUc -3'
miRNA:   3'- ugaUGCGCGGu--UCGCGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 128445 0.71 0.707988
Target:  5'- uGCUGCGUgGCCGucaagcGGCGCgaCGGCGCgCg -3'
miRNA:   3'- -UGAUGCG-CGGU------UCGCGaaGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 128207 0.66 0.9317
Target:  5'- --gACGCGCUcgcuuaacguGAcGCGUUaUCGACGCCg -3'
miRNA:   3'- ugaUGCGCGG----------UU-CGCGA-AGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.