Results 101 - 120 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 77959 | 0.69 | 0.841531 |
Target: 5'- aGCUGCGCGgCAAGCacauccGCUUguacgUGGCGgCCg -3' miRNA: 3'- -UGAUGCGCgGUUCG------CGAA-----GCUGCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 77860 | 0.73 | 0.619576 |
Target: 5'- uGCUGCuGCaggugGCCGAGCGCcUgGGCGCCg -3' miRNA: 3'- -UGAUG-CG-----CGGUUCGCGaAgCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 77598 | 0.67 | 0.898137 |
Target: 5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3' miRNA: 3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 76350 | 0.66 | 0.945481 |
Target: 5'- uCUGaaucaGCGCCGAGaGCacgUCaACGCCCu -3' miRNA: 3'- uGAUg----CGCGGUUCgCGa--AGcUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 75935 | 0.69 | 0.83199 |
Target: 5'- -aUGCGCGCCAAGUucuggcggaaccagaGCU-CGAcgggcugcggcgaguCGCCCa -3' miRNA: 3'- ugAUGCGCGGUUCG---------------CGAaGCU---------------GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 48837 | 0.67 | 0.9214 |
Target: 5'- aACcACGCGUCAGG-GCggugCGGCGUUCg -3' miRNA: 3'- -UGaUGCGCGGUUCgCGaa--GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 41185 | 0.71 | 0.727179 |
Target: 5'- gACUGgGCcgacaGCgCAAGCGaCUUUGACGCCg -3' miRNA: 3'- -UGAUgCG-----CG-GUUCGC-GAAGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 39539 | 0.67 | 0.9214 |
Target: 5'- gUUGCGCuggGCCAugGGCGCcggacaccucCGACGUCCa -3' miRNA: 3'- uGAUGCG---CGGU--UCGCGaa--------GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 39200 | 0.66 | 0.936044 |
Target: 5'- -gUugGCcaaaaacGCCGcGCGCcacaCGGCGCCCa -3' miRNA: 3'- ugAugCG-------CGGUuCGCGaa--GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 38775 | 0.68 | 0.864244 |
Target: 5'- --cGCGCGCgGGGUGCcc--ACGCCCa -3' miRNA: 3'- ugaUGCGCGgUUCGCGaagcUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 38038 | 0.69 | 0.808797 |
Target: 5'- gACU-CGCGuCCcAGCGCcagCG-CGCCCa -3' miRNA: 3'- -UGAuGCGC-GGuUCGCGaa-GCuGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 31591 | 0.66 | 0.945481 |
Target: 5'- aGCUGCGuCGUCAaggacGGCGUgUUgGACGCUg -3' miRNA: 3'- -UGAUGC-GCGGU-----UCGCG-AAgCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 30585 | 0.74 | 0.56068 |
Target: 5'- gACgACGCGCCGGGCgGCUUCcuGCGgCCg -3' miRNA: 3'- -UGaUGCGCGGUUCG-CGAAGc-UGCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 29235 | 0.74 | 0.541355 |
Target: 5'- gGCUACGCGgaUCGAGUGC--CGACGCCg -3' miRNA: 3'- -UGAUGCGC--GGUUCGCGaaGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 28234 | 0.67 | 0.913659 |
Target: 5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3' miRNA: 3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 27503 | 0.68 | 0.878419 |
Target: 5'- aGCUuuCGCGCUAAGCGUUggGA-GCUCa -3' miRNA: 3'- -UGAu-GCGCGGUUCGCGAagCUgCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 26348 | 0.67 | 0.910209 |
Target: 5'- cGCUGgGCuaCAAGUGCagCGACGauCCCu -3' miRNA: 3'- -UGAUgCGcgGUUCGCGaaGCUGC--GGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 26046 | 0.67 | 0.898137 |
Target: 5'- -aUACGcCGCCGGGCGCUgCGgu-CCCg -3' miRNA: 3'- ugAUGC-GCGGUUCGCGAaGCugcGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 25401 | 0.68 | 0.862783 |
Target: 5'- gGCUugacCGCGUUguuGAGCGCcuucugcuacgCGGCGCCCg -3' miRNA: 3'- -UGAu---GCGCGG---UUCGCGaa---------GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 21349 | 0.7 | 0.773674 |
Target: 5'- gGCUGCGCGCCuc-CGUccUCGuCGCCUu -3' miRNA: 3'- -UGAUGCGCGGuucGCGa-AGCuGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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