Results 121 - 140 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 201625 | 0.68 | 0.887857 |
Target: 5'- cACaACGUGCCGucugaacuguaccugGGCGCcUCGgGCGCCa -3' miRNA: 3'- -UGaUGCGCGGU---------------UCGCGaAGC-UGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 92369 | 0.67 | 0.891128 |
Target: 5'- --gACGCGgcagcaaCCAGGCGC--CGGCGCCg -3' miRNA: 3'- ugaUGCGC-------GGUUCGCGaaGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 161736 | 0.67 | 0.904282 |
Target: 5'- cGCUA-GCGUCAcGGCGCUcUCGACaGCUUg -3' miRNA: 3'- -UGAUgCGCGGU-UCGCGA-AGCUG-CGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 222658 | 0.67 | 0.906679 |
Target: 5'- --gACGCgaguguuccauaaaaGCCGGGCGCUcCGGCGagaCCa -3' miRNA: 3'- ugaUGCG---------------CGGUUCGCGAaGCUGCg--GG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 26348 | 0.67 | 0.910209 |
Target: 5'- cGCUGgGCuaCAAGUGCagCGACGauCCCu -3' miRNA: 3'- -UGAUgCGcgGUUCGCGaaGCUGC--GGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 2484 | 0.67 | 0.9214 |
Target: 5'- --cGCGCGCC--GCGCUgugGGCGCgCg -3' miRNA: 3'- ugaUGCGCGGuuCGCGAag-CUGCGgG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 165797 | 0.67 | 0.9214 |
Target: 5'- cGCU-CGCGCUccaAAGCGag-CGAuguCGCCCu -3' miRNA: 3'- -UGAuGCGCGG---UUCGCgaaGCU---GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 127035 | 0.67 | 0.9214 |
Target: 5'- uCUAUGCGCCu--CGCUaCGcACaGCCCa -3' miRNA: 3'- uGAUGCGCGGuucGCGAaGC-UG-CGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 110174 | 0.67 | 0.9214 |
Target: 5'- cCUGCacUGCCAGGUGCUUCGGCucaucaCCa -3' miRNA: 3'- uGAUGc-GCGGUUCGCGAAGCUGcg----GG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 39539 | 0.67 | 0.9214 |
Target: 5'- gUUGCGCuggGCCAugGGCGCcggacaccucCGACGUCCa -3' miRNA: 3'- uGAUGCG---CGGU--UCGCGaa--------GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 48837 | 0.67 | 0.9214 |
Target: 5'- aACcACGCGUCAGG-GCggugCGGCGUUCg -3' miRNA: 3'- -UGaUGCGCGGUUCgCGaa--GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 161270 | 0.67 | 0.919778 |
Target: 5'- aGCUggACGUGUCGuuccAGCGCgUUCaacccgcguguaaaGGCGCCCa -3' miRNA: 3'- -UGA--UGCGCGGU----UCGCG-AAG--------------CUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 165129 | 0.67 | 0.920861 |
Target: 5'- cGCUGcCGUGUCc-GCGCUUucucggaCGACGCCg -3' miRNA: 3'- -UGAU-GCGCGGuuCGCGAA-------GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 2033 | 0.67 | 0.9214 |
Target: 5'- gGCggggACGCGCCGuGCGCgauagCGGgaGCCg -3' miRNA: 3'- -UGa---UGCGCGGUuCGCGaa---GCUg-CGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 130298 | 0.67 | 0.915915 |
Target: 5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3' miRNA: 3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 28234 | 0.67 | 0.913659 |
Target: 5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3' miRNA: 3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 193270 | 0.67 | 0.910209 |
Target: 5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3' miRNA: 3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 173163 | 0.67 | 0.910209 |
Target: 5'- ---cCGCGUCAAGCGUaaCGuuaaaaaaGCGCCCu -3' miRNA: 3'- ugauGCGCGGUUCGCGaaGC--------UGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 109436 | 0.67 | 0.910209 |
Target: 5'- aACU-CGUaaccaCCGAGCGCaa-GACGCCCc -3' miRNA: 3'- -UGAuGCGc----GGUUCGCGaagCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 208433 | 0.67 | 0.904282 |
Target: 5'- --aGCGcCGCCuAGCGCcgucaacUCGAUGCCg -3' miRNA: 3'- ugaUGC-GCGGuUCGCGa------AGCUGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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