Results 81 - 100 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 161270 | 0.67 | 0.919778 |
Target: 5'- aGCUggACGUGUCGuuccAGCGCgUUCaacccgcguguaaaGGCGCCCa -3' miRNA: 3'- -UGA--UGCGCGGU----UCGCG-AAG--------------CUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 165129 | 0.67 | 0.920861 |
Target: 5'- cGCUGcCGUGUCc-GCGCUUucucggaCGACGCCg -3' miRNA: 3'- -UGAU-GCGCGGuuCGCGAA-------GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 2033 | 0.67 | 0.9214 |
Target: 5'- gGCggggACGCGCCGuGCGCgauagCGGgaGCCg -3' miRNA: 3'- -UGa---UGCGCGGUuCGCGaa---GCUg-CGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 130298 | 0.67 | 0.915915 |
Target: 5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3' miRNA: 3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 28234 | 0.67 | 0.913659 |
Target: 5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3' miRNA: 3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 193270 | 0.67 | 0.910209 |
Target: 5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3' miRNA: 3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 173163 | 0.67 | 0.910209 |
Target: 5'- ---cCGCGUCAAGCGUaaCGuuaaaaaaGCGCCCu -3' miRNA: 3'- ugauGCGCGGUUCGCGaaGC--------UGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 127035 | 0.67 | 0.9214 |
Target: 5'- uCUAUGCGCCu--CGCUaCGcACaGCCCa -3' miRNA: 3'- uGAUGCGCGGuucGCGAaGC-UG-CGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 165797 | 0.67 | 0.9214 |
Target: 5'- cGCU-CGCGCUccaAAGCGag-CGAuguCGCCCu -3' miRNA: 3'- -UGAuGCGCGG---UUCGCgaaGCU---GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 2484 | 0.67 | 0.9214 |
Target: 5'- --cGCGCGCC--GCGCUgugGGCGCgCg -3' miRNA: 3'- ugaUGCGCGGuuCGCGAag-CUGCGgG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 117821 | 0.66 | 0.936044 |
Target: 5'- cACUGCGCcaGCCAGGUagaagaaGCacCGGCGgCCg -3' miRNA: 3'- -UGAUGCG--CGGUUCG-------CGaaGCUGCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 88245 | 0.66 | 0.9317 |
Target: 5'- cGCUGC-CGCCGgugaagagAGCGCggCGuACGCUg -3' miRNA: 3'- -UGAUGcGCGGU--------UCGCGaaGC-UGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 4893 | 0.66 | 0.9317 |
Target: 5'- cGCUGCucugaaGCCAAGUGCcgaCGGCGCUUu -3' miRNA: 3'- -UGAUGcg----CGGUUCGCGaa-GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 228745 | 0.66 | 0.931206 |
Target: 5'- --cGCGCgggggacgggguaGCCGAGUGCU---GCGCCCu -3' miRNA: 3'- ugaUGCG-------------CGGUUCGCGAagcUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 79642 | 0.66 | 0.9317 |
Target: 5'- uGCUGCaccacaGCGCCAGGCGgCUgaucugcagCG-CGCUCu -3' miRNA: 3'- -UGAUG------CGCGGUUCGC-GAa--------GCuGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 82814 | 0.66 | 0.926661 |
Target: 5'- uGCUcaaacCGCGUCGugAGCGCggCGGCuCCCa -3' miRNA: 3'- -UGAu----GCGCGGU--UCGCGaaGCUGcGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 1826 | 0.66 | 0.926661 |
Target: 5'- -gUACGaGCCGuuCGCgUCGGCGCCg -3' miRNA: 3'- ugAUGCgCGGUucGCGaAGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 763 | 0.66 | 0.926145 |
Target: 5'- aGCUGCGUGUCGcccgcggcacacgGGCGaCgaaGGCGUCCg -3' miRNA: 3'- -UGAUGCGCGGU-------------UCGC-GaagCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 108599 | 0.66 | 0.926661 |
Target: 5'- cACUACccgucgGCgGCCGAGCGCaaacacCGACaccuGCCCg -3' miRNA: 3'- -UGAUG------CG-CGGUUCGCGaa----GCUG----CGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 194021 | 0.67 | 0.9214 |
Target: 5'- gGCUgGCGCGCgaccuCAGGgGCUUCGuGCGCg- -3' miRNA: 3'- -UGA-UGCGCG-----GUUCgCGAAGC-UGCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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