miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 5' -52.7 NC_001347.2 + 192119 0.66 0.991268
Target:  5'- cUGGUCGccgccACCGCCGUcguuGCCGGUc -3'
miRNA:   3'- aACCGGCaua--UGGUGGCAu---UGGUCAc -5'
1606 5' -52.7 NC_001347.2 + 153090 0.66 0.988694
Target:  5'- -aGGCagGUGUGCUGCCGguGCgAGUGg -3'
miRNA:   3'- aaCCGg-CAUAUGGUGGCauUGgUCAC- -5'
1606 5' -52.7 NC_001347.2 + 1611 0.66 0.988694
Target:  5'- -cGGCUGU--ACCGCUGcAACCGGcUGg -3'
miRNA:   3'- aaCCGGCAuaUGGUGGCaUUGGUC-AC- -5'
1606 5' -52.7 NC_001347.2 + 172381 0.66 0.985393
Target:  5'- -cGGCCGUGaACCugAgCGUguuugugGACCAGUGc -3'
miRNA:   3'- aaCCGGCAUaUGG--UgGCA-------UUGGUCAC- -5'
1606 5' -52.7 NC_001347.2 + 225575 0.67 0.983771
Target:  5'- -cGGCgGUGacuuaGCCGcCCGUGGCCGGg- -3'
miRNA:   3'- aaCCGgCAUa----UGGU-GGCAUUGGUCac -5'
1606 5' -52.7 NC_001347.2 + 191594 0.67 0.983771
Target:  5'- -aGGCCGUGUugUACUGc--UCGGUGu -3'
miRNA:   3'- aaCCGGCAUAugGUGGCauuGGUCAC- -5'
1606 5' -52.7 NC_001347.2 + 137393 0.67 0.982617
Target:  5'- gUGGCUGUAUacguaagcggauaugGCUACaCGUAAUgGGUGu -3'
miRNA:   3'- aACCGGCAUA---------------UGGUG-GCAUUGgUCAC- -5'
1606 5' -52.7 NC_001347.2 + 76979 0.67 0.977375
Target:  5'- --uGCCGgcgcCCGCCGU-GCCGGUGa -3'
miRNA:   3'- aacCGGCauauGGUGGCAuUGGUCAC- -5'
1606 5' -52.7 NC_001347.2 + 114413 0.67 0.974091
Target:  5'- -cGGCCGUGUucgaugaaacgcgcGCCGCCcGUcucAGCCAGc- -3'
miRNA:   3'- aaCCGGCAUA--------------UGGUGG-CA---UUGGUCac -5'
1606 5' -52.7 NC_001347.2 + 147905 0.68 0.969292
Target:  5'- -gGGCCGUggGUGgCGCgGUGGCCuccGUGg -3'
miRNA:   3'- aaCCGGCA--UAUgGUGgCAUUGGu--CAC- -5'
1606 5' -52.7 NC_001347.2 + 87588 0.68 0.959335
Target:  5'- gUGGCCGUGagcagACCGCgGUGcacGCCcGUGc -3'
miRNA:   3'- aACCGGCAUa----UGGUGgCAU---UGGuCAC- -5'
1606 5' -52.7 NC_001347.2 + 63252 0.69 0.955572
Target:  5'- -cGGCCGcugcgcCCGCCGUGGCCAc-- -3'
miRNA:   3'- aaCCGGCauau--GGUGGCAUUGGUcac -5'
1606 5' -52.7 NC_001347.2 + 20143 0.69 0.95158
Target:  5'- uUUGGCCGU----CAUCGUGACCucGGUGg -3'
miRNA:   3'- -AACCGGCAuaugGUGGCAUUGG--UCAC- -5'
1606 5' -52.7 NC_001347.2 + 98779 0.69 0.938192
Target:  5'- aUGGCCGUA-GCCGCUuugAACCAGc- -3'
miRNA:   3'- aACCGGCAUaUGGUGGca-UUGGUCac -5'
1606 5' -52.7 NC_001347.2 + 175651 0.7 0.904281
Target:  5'- cUUGGCCGUGguguUCACCGUGgugauuaACCGGg- -3'
miRNA:   3'- -AACCGGCAUau--GGUGGCAU-------UGGUCac -5'
1606 5' -52.7 NC_001347.2 + 96206 0.71 0.891898
Target:  5'- -cGGCCGUAggcGCCuACCGacACCAGUu -3'
miRNA:   3'- aaCCGGCAUa--UGG-UGGCauUGGUCAc -5'
1606 5' -52.7 NC_001347.2 + 63110 0.73 0.822501
Target:  5'- gUGGCCGccgcggccGCCGCUGUGGCCGGa- -3'
miRNA:   3'- aACCGGCaua-----UGGUGGCAUUGGUCac -5'
1606 5' -52.7 NC_001347.2 + 37057 0.73 0.813816
Target:  5'- -cGGCCGcggagGUGCUggcgGCCGUGGCCuGUGg -3'
miRNA:   3'- aaCCGGCa----UAUGG----UGGCAUUGGuCAC- -5'
1606 5' -52.7 NC_001347.2 + 68739 0.74 0.738068
Target:  5'- -aGGCCGUggagcgaGUGCCGCCGcAGCCGGc- -3'
miRNA:   3'- aaCCGGCA-------UAUGGUGGCaUUGGUCac -5'
1606 5' -52.7 NC_001347.2 + 157776 1.07 0.010485
Target:  5'- uUUGGCCGUAUACCACCGUAACCAGUGg -3'
miRNA:   3'- -AACCGGCAUAUGGUGGCAUUGGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.