miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 3' -58.9 NC_004065.1 + 129888 0.66 0.895645
Target:  5'- aUGCUCAUCGGCuGgaggCgCUGAUCgggGUGCUc -3'
miRNA:   3'- cACGAGUAGCCG-Ca---G-GACUGG---CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 165591 0.66 0.895645
Target:  5'- -aGUUCcUCaGCGUCUgcgUGGCCGCGaCCn -3'
miRNA:   3'- caCGAGuAGcCGCAGG---ACUGGCGC-GG- -5'
16067 3' -58.9 NC_004065.1 + 207478 0.66 0.895645
Target:  5'- uGUGCcgCGUCGGagucagcuCGUCCaGACuCGCGgCg -3'
miRNA:   3'- -CACGa-GUAGCC--------GCAGGaCUG-GCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 26044 0.66 0.895645
Target:  5'- -gGCUCGcacgCGGCGUCga-ACCGCgaGCCg -3'
miRNA:   3'- caCGAGUa---GCCGCAGgacUGGCG--CGG- -5'
16067 3' -58.9 NC_004065.1 + 201539 0.66 0.895645
Target:  5'- -aGCUCcgCGGCG-CUgucGGCCaGaCGCCa -3'
miRNA:   3'- caCGAGuaGCCGCaGGa--CUGG-C-GCGG- -5'
16067 3' -58.9 NC_004065.1 + 31694 0.66 0.889295
Target:  5'- gGUGC--GUCGGUG-CCcGAgCGUGCCg -3'
miRNA:   3'- -CACGagUAGCCGCaGGaCUgGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 202085 0.66 0.889295
Target:  5'- uGUGCUgcacCAUCGGCGaCCUGAUCuCcCCc -3'
miRNA:   3'- -CACGA----GUAGCCGCaGGACUGGcGcGG- -5'
16067 3' -58.9 NC_004065.1 + 89805 0.66 0.889295
Target:  5'- ----aCAUCGGCGgccgUCUGcGCCGCGaCCu -3'
miRNA:   3'- cacgaGUAGCCGCa---GGAC-UGGCGC-GG- -5'
16067 3' -58.9 NC_004065.1 + 121074 0.66 0.889295
Target:  5'- cGUGCcccaggUCGUCGGCGUaCUG-CCGCagGCg -3'
miRNA:   3'- -CACG------AGUAGCCGCAgGACuGGCG--CGg -5'
16067 3' -58.9 NC_004065.1 + 109825 0.66 0.882739
Target:  5'- --cCUCGUCGcCGUCCUG-CUGCGgCg -3'
miRNA:   3'- cacGAGUAGCcGCAGGACuGGCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 100024 0.66 0.882739
Target:  5'- -gGCUCGUCgcugccucggGGCGguauccuccgcagagCCUGACCcucgcucgcgugaGCGCCu -3'
miRNA:   3'- caCGAGUAG----------CCGCa--------------GGACUGG-------------CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 83287 0.66 0.882739
Target:  5'- -gGcCUCG-CGGCGgCC-GACCGCuGCCu -3'
miRNA:   3'- caC-GAGUaGCCGCaGGaCUGGCG-CGG- -5'
16067 3' -58.9 NC_004065.1 + 157899 0.66 0.878709
Target:  5'- cGUGUUCAUCGccGCGUCCaccguccuccugUccagucuggcgaucaGGCCGCGCa -3'
miRNA:   3'- -CACGAGUAGC--CGCAGG------------A---------------CUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 83190 0.66 0.875982
Target:  5'- -cGCUCccggCGGCccgcucucgaGUCCcccGugCGCGCCg -3'
miRNA:   3'- caCGAGua--GCCG----------CAGGa--CugGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 211484 0.66 0.875982
Target:  5'- -aGgUCGUCGGCGUCgaGuCCGaacCGUCg -3'
miRNA:   3'- caCgAGUAGCCGCAGgaCuGGC---GCGG- -5'
16067 3' -58.9 NC_004065.1 + 124480 0.66 0.869028
Target:  5'- -cGCUgCGcCGG-GUCCagGGCCGCGCg -3'
miRNA:   3'- caCGA-GUaGCCgCAGGa-CUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 170072 0.66 0.864762
Target:  5'- -cGC-CAaccUGGCGggcaccacuccgggcUUCUGGCCGCGCCg -3'
miRNA:   3'- caCGaGUa--GCCGC---------------AGGACUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 176229 0.66 0.86188
Target:  5'- -gGCUC-UCGGCG----GACCGCGCa -3'
miRNA:   3'- caCGAGuAGCCGCaggaCUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 103131 0.66 0.86188
Target:  5'- cGUGCUCGUCcgaGGCGUUCa-GCaCGCGUa -3'
miRNA:   3'- -CACGAGUAG---CCGCAGGacUG-GCGCGg -5'
16067 3' -58.9 NC_004065.1 + 156896 0.66 0.86188
Target:  5'- -cGCgCGUCGGgGUCCcGAUCcucCGCCg -3'
miRNA:   3'- caCGaGUAGCCgCAGGaCUGGc--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.