miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 3' -58.9 NC_004065.1 + 91600 1.11 0.00177
Target:  5'- uGUGCUCAUCGGCGUCCUGACCGCGCCg -3'
miRNA:   3'- -CACGAGUAGCCGCAGGACUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 161877 0.85 0.099365
Target:  5'- gGUGCUcCAUCGGCGgCCUGACCGaCGCUc -3'
miRNA:   3'- -CACGA-GUAGCCGCaGGACUGGC-GCGG- -5'
16067 3' -58.9 NC_004065.1 + 130500 0.8 0.201966
Target:  5'- aUGCUCAUCGagccgcGCGUCCUccucGugCGCGCCa -3'
miRNA:   3'- cACGAGUAGC------CGCAGGA----CugGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 35103 0.8 0.221836
Target:  5'- -aGCagAUCGGUGUCCUGGCUGUGCa -3'
miRNA:   3'- caCGagUAGCCGCAGGACUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 116133 0.78 0.285129
Target:  5'- -aGCUgGUCGGCGUCCUGcggcggcucgggGCCGgGUCg -3'
miRNA:   3'- caCGAgUAGCCGCAGGAC------------UGGCgCGG- -5'
16067 3' -58.9 NC_004065.1 + 100857 0.76 0.36185
Target:  5'- ---aUCAguUCGGCGUCCaGGCUGCGCCc -3'
miRNA:   3'- cacgAGU--AGCCGCAGGaCUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 55879 0.76 0.377255
Target:  5'- -gGCgUCgAUCGGCGUCCaGGCCGaUGCCg -3'
miRNA:   3'- caCG-AG-UAGCCGCAGGaCUGGC-GCGG- -5'
16067 3' -58.9 NC_004065.1 + 167642 0.75 0.385121
Target:  5'- aUGCUCGUCGGCGggacggCCguACCGUGCUc -3'
miRNA:   3'- cACGAGUAGCCGCa-----GGacUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 171443 0.75 0.409361
Target:  5'- -cGCcgUCGUCGGCGagcucaUCCgcugGAUCGCGCCg -3'
miRNA:   3'- caCG--AGUAGCCGC------AGGa---CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 166953 0.75 0.42604
Target:  5'- -cGCUCGcCGGCGaccggcgacUCCUgcGACUGCGCCg -3'
miRNA:   3'- caCGAGUaGCCGC---------AGGA--CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 120624 0.74 0.469435
Target:  5'- -aGCUCGU-GGCGUCC--GCCGCgGCCg -3'
miRNA:   3'- caCGAGUAgCCGCAGGacUGGCG-CGG- -5'
16067 3' -58.9 NC_004065.1 + 196282 0.74 0.478384
Target:  5'- cGUGUUCGUUGGCGUaaucgaCCUcGCUGCGCUc -3'
miRNA:   3'- -CACGAGUAGCCGCA------GGAcUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 108246 0.73 0.533699
Target:  5'- -cGCUCGUCGGCGcuuUCCguccGACC-CGUCa -3'
miRNA:   3'- caCGAGUAGCCGC---AGGa---CUGGcGCGG- -5'
16067 3' -58.9 NC_004065.1 + 23298 0.73 0.533699
Target:  5'- -gGCcuucgUUAUCGGCGUgUUGACCGUGCa -3'
miRNA:   3'- caCG-----AGUAGCCGCAgGACUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 109874 0.72 0.562211
Target:  5'- gGUGC-CAcCGGCGUCgCcgcGGCCGCGUCg -3'
miRNA:   3'- -CACGaGUaGCCGCAG-Ga--CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 174827 0.72 0.562211
Target:  5'- -cGCUCGUUcGCGUCgCUGACUaGCGCUc -3'
miRNA:   3'- caCGAGUAGcCGCAG-GACUGG-CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 139002 0.71 0.591119
Target:  5'- -aGCUCGggaCGGUGgCCaugGACCGCGUCa -3'
miRNA:   3'- caCGAGUa--GCCGCaGGa--CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 142969 0.71 0.591119
Target:  5'- -cGCgagUGUCuGGUGUCCUacGACCGCGUCu -3'
miRNA:   3'- caCGa--GUAG-CCGCAGGA--CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 202521 0.71 0.600817
Target:  5'- -cGCgaugaAUCuGGCGUCCUGACCGC-UCa -3'
miRNA:   3'- caCGag---UAG-CCGCAGGACUGGCGcGG- -5'
16067 3' -58.9 NC_004065.1 + 98256 0.71 0.600817
Target:  5'- -gGCUCGggaCGGCGgcCCUgGGCgCGCGCCu -3'
miRNA:   3'- caCGAGUa--GCCGCa-GGA-CUG-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.