miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 3' -58.9 NC_004065.1 + 156896 0.66 0.86188
Target:  5'- -cGCgCGUCGGgGUCCcGAUCcucCGCCg -3'
miRNA:   3'- caCGaGUAGCCgCAGGaCUGGc--GCGG- -5'
16067 3' -58.9 NC_004065.1 + 159938 0.67 0.854545
Target:  5'- cUGCUCGucgccUCGGgGUCCgcgccuuugagGAUCGCGgCg -3'
miRNA:   3'- cACGAGU-----AGCCgCAGGa----------CUGGCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 101600 0.67 0.854545
Target:  5'- -cGCUCAgacUCGGUGgcggcgCCgccGCCGCuGCCg -3'
miRNA:   3'- caCGAGU---AGCCGCa-----GGac-UGGCG-CGG- -5'
16067 3' -58.9 NC_004065.1 + 162882 0.67 0.854545
Target:  5'- --uCUCGUCcgcgaucGCGUCCaGGCgCGCGCCg -3'
miRNA:   3'- cacGAGUAGc------CGCAGGaCUG-GCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 64842 0.67 0.854545
Target:  5'- cGUGCUCuucuacccCGGCGugguguucgcaUCCUgcgGACCGCGgCg -3'
miRNA:   3'- -CACGAGua------GCCGC-----------AGGA---CUGGCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 198925 0.67 0.854545
Target:  5'- -cGCgcgCcgCcgGGCGUUCUGAUCGcCGCCc -3'
miRNA:   3'- caCGa--GuaG--CCGCAGGACUGGC-GCGG- -5'
16067 3' -58.9 NC_004065.1 + 163480 0.67 0.847027
Target:  5'- -aGCUcCGUCGGCGgcgCCggUGGCgGCGgCu -3'
miRNA:   3'- caCGA-GUAGCCGCa--GG--ACUGgCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 186539 0.67 0.847027
Target:  5'- aGUGaugUAUCGGCGgcgCCgagGACaCGUGCUg -3'
miRNA:   3'- -CACga-GUAGCCGCa--GGa--CUG-GCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 146611 0.67 0.847027
Target:  5'- -gGC-CGUCGGCGg---GGCCGUGUCu -3'
miRNA:   3'- caCGaGUAGCCGCaggaCUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 105839 0.67 0.847027
Target:  5'- cGUGCUacUCGGCGgCCUG--CGCGCa -3'
miRNA:   3'- -CACGAguAGCCGCaGGACugGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 198354 0.67 0.846266
Target:  5'- -aGCUCGcCGGgGUCCUucGCCaggaacaGCGCCg -3'
miRNA:   3'- caCGAGUaGCCgCAGGAc-UGG-------CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 122819 0.67 0.846266
Target:  5'- -cGCUCgcaugcgcgaguaGUCGcGCGUCUUguccuugacGACCGCGUCc -3'
miRNA:   3'- caCGAG-------------UAGC-CGCAGGA---------CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 5211 0.67 0.839333
Target:  5'- -gGCUaCGgacagaCGGCgGUCgUGACCGUGCUg -3'
miRNA:   3'- caCGA-GUa-----GCCG-CAGgACUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 49738 0.67 0.839333
Target:  5'- -aGUUCGgacCGGUGUCCgacacUGACgGCGCg -3'
miRNA:   3'- caCGAGUa--GCCGCAGG-----ACUGgCGCGg -5'
16067 3' -58.9 NC_004065.1 + 141361 0.67 0.839333
Target:  5'- -cGCUCG-CGG-GUgCUGGCgGCGCUc -3'
miRNA:   3'- caCGAGUaGCCgCAgGACUGgCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 223090 0.67 0.839333
Target:  5'- -aGCUUccgaCGGCGgacgCCgaGGCCGUGCCc -3'
miRNA:   3'- caCGAGua--GCCGCa---GGa-CUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 75665 0.67 0.838554
Target:  5'- -aGgUCGgcgaGGCGgccgcgggcugauUCUUGGCCGCGCCc -3'
miRNA:   3'- caCgAGUag--CCGC-------------AGGACUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 40065 0.67 0.831468
Target:  5'- -cGCUCAgaccauCGUgCUGACCuGCGCCg -3'
miRNA:   3'- caCGAGUagcc--GCAgGACUGG-CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 35936 0.67 0.831468
Target:  5'- gGUGCUCugucgCGGCcgcagGUCgucgGACuCGCGCCg -3'
miRNA:   3'- -CACGAGua---GCCG-----CAGga--CUG-GCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 91197 0.67 0.831468
Target:  5'- -cGC-CGUCGGCGUgCgcGGCaucgGCGCCg -3'
miRNA:   3'- caCGaGUAGCCGCAgGa-CUGg---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.