miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 3' -58.9 NC_004065.1 + 5211 0.67 0.839333
Target:  5'- -gGCUaCGgacagaCGGCgGUCgUGACCGUGCUg -3'
miRNA:   3'- caCGA-GUa-----GCCG-CAGgACUGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 8277 0.67 0.815252
Target:  5'- cUGCUCAUCGGa---CUGAUCgGgGCCg -3'
miRNA:   3'- cACGAGUAGCCgcagGACUGG-CgCGG- -5'
16067 3' -58.9 NC_004065.1 + 19416 0.69 0.754134
Target:  5'- -cGCcggCGUCGGCGgaggugCCggagGcACCGCGCUg -3'
miRNA:   3'- caCGa--GUAGCCGCa-----GGa---C-UGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 23298 0.73 0.533699
Target:  5'- -gGCcuucgUUAUCGGCGUgUUGACCGUGCa -3'
miRNA:   3'- caCG-----AGUAGCCGCAgGACUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 25545 0.69 0.726322
Target:  5'- -aGCgacagacggCGUCGGCGUCggccCCGCGCCu -3'
miRNA:   3'- caCGa--------GUAGCCGCAGgacuGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 26044 0.66 0.895645
Target:  5'- -gGCUCGcacgCGGCGUCga-ACCGCgaGCCg -3'
miRNA:   3'- caCGAGUa---GCCGCAGgacUGGCG--CGG- -5'
16067 3' -58.9 NC_004065.1 + 27725 0.67 0.823439
Target:  5'- cGUGCUCG-CGcGCuGUCCaaagaucugaUGACCcCGCCg -3'
miRNA:   3'- -CACGAGUaGC-CG-CAGG----------ACUGGcGCGG- -5'
16067 3' -58.9 NC_004065.1 + 28804 0.68 0.795001
Target:  5'- -aGCUCG-CGG-GUCCUcugcacgcacgucGCCGCGCCg -3'
miRNA:   3'- caCGAGUaGCCgCAGGAc------------UGGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 30452 0.7 0.659217
Target:  5'- cUGC-CGaagCGGCGUCUgGACCGCGgCa -3'
miRNA:   3'- cACGaGUa--GCCGCAGGaCUGGCGCgG- -5'
16067 3' -58.9 NC_004065.1 + 31694 0.66 0.889295
Target:  5'- gGUGC--GUCGGUG-CCcGAgCGUGCCg -3'
miRNA:   3'- -CACGagUAGCCGCaGGaCUgGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 32313 0.69 0.735677
Target:  5'- -aGCUCA-CGGCGgCCgcGACgGCGUCg -3'
miRNA:   3'- caCGAGUaGCCGCaGGa-CUGgCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 35103 0.8 0.221836
Target:  5'- -aGCagAUCGGUGUCCUGGCUGUGCa -3'
miRNA:   3'- caCGagUAGCCGCAGGACUGGCGCGg -5'
16067 3' -58.9 NC_004065.1 + 35936 0.67 0.831468
Target:  5'- gGUGCUCugucgCGGCcgcagGUCgucgGACuCGCGCCg -3'
miRNA:   3'- -CACGAGua---GCCG-----CAGga--CUG-GCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 38100 0.68 0.781068
Target:  5'- -aGCU-GUCGGCGUUCUucuUCGUGCCg -3'
miRNA:   3'- caCGAgUAGCCGCAGGAcu-GGCGCGG- -5'
16067 3' -58.9 NC_004065.1 + 40065 0.67 0.831468
Target:  5'- -cGCUCAgaccauCGUgCUGACCuGCGCCg -3'
miRNA:   3'- caCGAGUagcc--GCAgGACUGG-CGCGG- -5'
16067 3' -58.9 NC_004065.1 + 49738 0.67 0.839333
Target:  5'- -aGUUCGgacCGGUGUCCgacacUGACgGCGCg -3'
miRNA:   3'- caCGAGUa--GCCGCAGG-----ACUGgCGCGg -5'
16067 3' -58.9 NC_004065.1 + 55879 0.76 0.377255
Target:  5'- -gGCgUCgAUCGGCGUCCaGGCCGaUGCCg -3'
miRNA:   3'- caCG-AG-UAGCCGCAGGaCUGGC-GCGG- -5'
16067 3' -58.9 NC_004065.1 + 60851 0.68 0.806914
Target:  5'- ---aUCcUCGGCGUgUUGACCGCgaagGCCa -3'
miRNA:   3'- cacgAGuAGCCGCAgGACUGGCG----CGG- -5'
16067 3' -58.9 NC_004065.1 + 60889 0.69 0.74495
Target:  5'- -cGCUCG-CGaGCGUCucgggaacugCUGGCCGCgGCCc -3'
miRNA:   3'- caCGAGUaGC-CGCAG----------GACUGGCG-CGG- -5'
16067 3' -58.9 NC_004065.1 + 63867 0.71 0.630011
Target:  5'- gGUGCagaCGUCGGCGcCgCUGccGCCGgCGCCg -3'
miRNA:   3'- -CACGa--GUAGCCGCaG-GAC--UGGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.