Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16067 | 3' | -58.9 | NC_004065.1 | + | 25545 | 0.69 | 0.726322 |
Target: 5'- -aGCgacagacggCGUCGGCGUCggccCCGCGCCu -3' miRNA: 3'- caCGa--------GUAGCCGCAGgacuGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 109874 | 0.72 | 0.562211 |
Target: 5'- gGUGC-CAcCGGCGUCgCcgcGGCCGCGUCg -3' miRNA: 3'- -CACGaGUaGCCGCAG-Ga--CUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 139002 | 0.71 | 0.591119 |
Target: 5'- -aGCUCGggaCGGUGgCCaugGACCGCGUCa -3' miRNA: 3'- caCGAGUa--GCCGCaGGa--CUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 142969 | 0.71 | 0.591119 |
Target: 5'- -cGCgagUGUCuGGUGUCCUacGACCGCGUCu -3' miRNA: 3'- caCGa--GUAG-CCGCAGGA--CUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 98256 | 0.71 | 0.600817 |
Target: 5'- -gGCUCGggaCGGCGgcCCUgGGCgCGCGCCu -3' miRNA: 3'- caCGAGUa--GCCGCa-GGA-CUG-GCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 141187 | 0.7 | 0.649492 |
Target: 5'- cGUGCUCAUCaacua--UGACCGCGCCg -3' miRNA: 3'- -CACGAGUAGccgcaggACUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 194965 | 0.7 | 0.659217 |
Target: 5'- -aGCUgGUCGaUGuUCCUGGCCGCGUa -3' miRNA: 3'- caCGAgUAGCcGC-AGGACUGGCGCGg -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 89467 | 0.7 | 0.688246 |
Target: 5'- cUGCUCugCGGCGUCUUGGagaUGgGCCg -3' miRNA: 3'- cACGAGuaGCCGCAGGACUg--GCgCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 149873 | 0.7 | 0.697847 |
Target: 5'- -aGCUC-UCGGaUGUCCUG--CGCGCCc -3' miRNA: 3'- caCGAGuAGCC-GCAGGACugGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 108246 | 0.73 | 0.533699 |
Target: 5'- -cGCUCGUCGGCGcuuUCCguccGACC-CGUCa -3' miRNA: 3'- caCGAGUAGCCGC---AGGa---CUGGcGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 196282 | 0.74 | 0.478384 |
Target: 5'- cGUGUUCGUUGGCGUaaucgaCCUcGCUGCGCUc -3' miRNA: 3'- -CACGAGUAGCCGCA------GGAcUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 120624 | 0.74 | 0.469435 |
Target: 5'- -aGCUCGU-GGCGUCC--GCCGCgGCCg -3' miRNA: 3'- caCGAGUAgCCGCAGGacUGGCG-CGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 161877 | 0.85 | 0.099365 |
Target: 5'- gGUGCUcCAUCGGCGgCCUGACCGaCGCUc -3' miRNA: 3'- -CACGA-GUAGCCGCaGGACUGGC-GCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 130500 | 0.8 | 0.201966 |
Target: 5'- aUGCUCAUCGagccgcGCGUCCUccucGugCGCGCCa -3' miRNA: 3'- cACGAGUAGC------CGCAGGA----CugGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 35103 | 0.8 | 0.221836 |
Target: 5'- -aGCagAUCGGUGUCCUGGCUGUGCa -3' miRNA: 3'- caCGagUAGCCGCAGGACUGGCGCGg -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 116133 | 0.78 | 0.285129 |
Target: 5'- -aGCUgGUCGGCGUCCUGcggcggcucgggGCCGgGUCg -3' miRNA: 3'- caCGAgUAGCCGCAGGAC------------UGGCgCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 100857 | 0.76 | 0.36185 |
Target: 5'- ---aUCAguUCGGCGUCCaGGCUGCGCCc -3' miRNA: 3'- cacgAGU--AGCCGCAGGaCUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 55879 | 0.76 | 0.377255 |
Target: 5'- -gGCgUCgAUCGGCGUCCaGGCCGaUGCCg -3' miRNA: 3'- caCG-AG-UAGCCGCAGGaCUGGC-GCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 167642 | 0.75 | 0.385121 |
Target: 5'- aUGCUCGUCGGCGggacggCCguACCGUGCUc -3' miRNA: 3'- cACGAGUAGCCGCa-----GGacUGGCGCGG- -5' |
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16067 | 3' | -58.9 | NC_004065.1 | + | 166953 | 0.75 | 0.42604 |
Target: 5'- -cGCUCGcCGGCGaccggcgacUCCUgcGACUGCGCCg -3' miRNA: 3'- caCGAGUaGCCGC---------AGGA--CUGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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