miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 5' -52 NC_004065.1 + 35627 0.66 0.997502
Target:  5'- gGCGG-CGGCGG-CGGGgaugUcAUCGGCGa -3'
miRNA:   3'- -CGCCaGCUGCCaGUCCa---GaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 210145 0.66 0.997502
Target:  5'- gGCGG-CGACGGgguggaUCAGGgucUCUAgcacgccauUCGGCAg -3'
miRNA:   3'- -CGCCaGCUGCC------AGUCC---AGAU---------AGUUGU- -5'
16067 5' -52 NC_004065.1 + 36728 0.66 0.99706
Target:  5'- aCGGcgCGACGGUUcucUCUGUCAACu -3'
miRNA:   3'- cGCCa-GCUGCCAGuccAGAUAGUUGu -5'
16067 5' -52 NC_004065.1 + 88633 0.66 0.99706
Target:  5'- cGCGGcUCGAUGGcgCAGaGUUUcugCAGCAu -3'
miRNA:   3'- -CGCC-AGCUGCCa-GUC-CAGAua-GUUGU- -5'
16067 5' -52 NC_004065.1 + 40569 0.66 0.996555
Target:  5'- cGCGGUCGuACcGUCgacGGGUCUcUCGAg- -3'
miRNA:   3'- -CGCCAGC-UGcCAG---UCCAGAuAGUUgu -5'
16067 5' -52 NC_004065.1 + 109142 0.66 0.996555
Target:  5'- gGCGGgUGACGG-CGGuUCcGUCGACAa -3'
miRNA:   3'- -CGCCaGCUGCCaGUCcAGaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 30286 0.66 0.996555
Target:  5'- cGgGGUCGugGGccugCGGGUCgggCAGg- -3'
miRNA:   3'- -CgCCAGCugCCa---GUCCAGauaGUUgu -5'
16067 5' -52 NC_004065.1 + 6481 0.66 0.995981
Target:  5'- cGCGuuGUCGcgaaccgcACGGUCGGGUCgcggcCGGCAc -3'
miRNA:   3'- -CGC--CAGC--------UGCCAGUCCAGaua--GUUGU- -5'
16067 5' -52 NC_004065.1 + 100376 0.66 0.995981
Target:  5'- cCGGUCGACGGcCA-GUCUGUg---- -3'
miRNA:   3'- cGCCAGCUGCCaGUcCAGAUAguugu -5'
16067 5' -52 NC_004065.1 + 176329 0.66 0.995331
Target:  5'- -aGGagGGCGGUCGGG-Cgg-CGACAc -3'
miRNA:   3'- cgCCagCUGCCAGUCCaGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 157293 0.67 0.994598
Target:  5'- aGCGGUCGAaGcUCAGGUCgcgCGAa- -3'
miRNA:   3'- -CGCCAGCUgCcAGUCCAGauaGUUgu -5'
16067 5' -52 NC_004065.1 + 40180 0.67 0.994598
Target:  5'- cGCGG-CGACGaG-CAGGUCccgAUCGAa- -3'
miRNA:   3'- -CGCCaGCUGC-CaGUCCAGa--UAGUUgu -5'
16067 5' -52 NC_004065.1 + 227512 0.67 0.992853
Target:  5'- aCGGUUGACGGUgAGGaUUUAgUGGCAu -3'
miRNA:   3'- cGCCAGCUGCCAgUCC-AGAUaGUUGU- -5'
16067 5' -52 NC_004065.1 + 151405 0.67 0.992853
Target:  5'- gGCGGaggCGGguCGGUCGGGgugGUCGACc -3'
miRNA:   3'- -CGCCa--GCU--GCCAGUCCagaUAGUUGu -5'
16067 5' -52 NC_004065.1 + 170288 0.67 0.992755
Target:  5'- cGCGGUCGGCaccaucgccgccgGGUC-GGUaaacAUCGGCAg -3'
miRNA:   3'- -CGCCAGCUG-------------CCAGuCCAga--UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 38440 0.67 0.991825
Target:  5'- cGUGGaCGGCGG-CAGGaggCUcAUCGGCAc -3'
miRNA:   3'- -CGCCaGCUGCCaGUCCa--GA-UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 120934 0.67 0.991825
Target:  5'- uGCGG-CGugcacACGGUCGGGUCcgggUAGCGg -3'
miRNA:   3'- -CGCCaGC-----UGCCAGUCCAGaua-GUUGU- -5'
16067 5' -52 NC_004065.1 + 213299 0.67 0.990685
Target:  5'- cGUGGaCGACGGUUcGGUC-GUCggUAg -3'
miRNA:   3'- -CGCCaGCUGCCAGuCCAGaUAGuuGU- -5'
16067 5' -52 NC_004065.1 + 222969 0.67 0.990685
Target:  5'- uGUGGUUGACGGUUGGGgauucgGUCGcccgGCGu -3'
miRNA:   3'- -CGCCAGCUGCCAGUCCaga---UAGU----UGU- -5'
16067 5' -52 NC_004065.1 + 107748 0.68 0.989422
Target:  5'- uCGGcCGGCGGaugcccCAGGUCggUGUCGGCGc -3'
miRNA:   3'- cGCCaGCUGCCa-----GUCCAG--AUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.