miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 5' -52 NC_004065.1 + 107748 0.68 0.989422
Target:  5'- uCGGcCGGCGGaugcccCAGGUCggUGUCGGCGc -3'
miRNA:   3'- cGCCaGCUGCCa-----GUCCAG--AUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 33012 0.68 0.989422
Target:  5'- aCGGUCGuCGGUCGGaucGUCauccgCAACAa -3'
miRNA:   3'- cGCCAGCuGCCAGUC---CAGaua--GUUGU- -5'
16067 5' -52 NC_004065.1 + 143115 0.68 0.98803
Target:  5'- cGCGG-CGcCGGgaaAGGUC-GUCGACAu -3'
miRNA:   3'- -CGCCaGCuGCCag-UCCAGaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 68110 0.68 0.9865
Target:  5'- gGCGGUgCaGCGGUUcgagagccugauGGGUCUGUCGgACGa -3'
miRNA:   3'- -CGCCA-GcUGCCAG------------UCCAGAUAGU-UGU- -5'
16067 5' -52 NC_004065.1 + 138773 0.68 0.984824
Target:  5'- cGCGGUCGAUGGcgUCaAGGUCccgcucUAUCccuACAc -3'
miRNA:   3'- -CGCCAGCUGCC--AG-UCCAG------AUAGu--UGU- -5'
16067 5' -52 NC_004065.1 + 24970 0.68 0.984824
Target:  5'- uCGGUCGugGGUgGGcGUCccUCGGCc -3'
miRNA:   3'- cGCCAGCugCCAgUC-CAGauAGUUGu -5'
16067 5' -52 NC_004065.1 + 161025 0.68 0.983745
Target:  5'- gGCGGcaUCGACGuG-CAGGggccggucgacgcuaUCUAUCGGCAu -3'
miRNA:   3'- -CGCC--AGCUGC-CaGUCC---------------AGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 201848 0.68 0.982994
Target:  5'- uGCGGUacguggacagaUGGCGGuUCAGGUCguagccgGUCAcGCAg -3'
miRNA:   3'- -CGCCA-----------GCUGCC-AGUCCAGa------UAGU-UGU- -5'
16067 5' -52 NC_004065.1 + 128626 0.68 0.982994
Target:  5'- aCGGUCGuuggcggaGGUCAGGggaccgCcGUCAGCAg -3'
miRNA:   3'- cGCCAGCug------CCAGUCCa-----GaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 51665 0.68 0.982994
Target:  5'- cGCGGguuccUUGAUGGUCAGGUguucguaggagCUAUC-GCAg -3'
miRNA:   3'- -CGCC-----AGCUGCCAGUCCA-----------GAUAGuUGU- -5'
16067 5' -52 NC_004065.1 + 222005 0.69 0.978842
Target:  5'- cGUGGUCGugGGUCuGGUaguagGACGg -3'
miRNA:   3'- -CGCCAGCugCCAGuCCAgauagUUGU- -5'
16067 5' -52 NC_004065.1 + 4461 0.7 0.96836
Target:  5'- cGCGGgu--CGGUCAGGUUccgCAACAg -3'
miRNA:   3'- -CGCCagcuGCCAGUCCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 197937 0.7 0.961923
Target:  5'- uCGGUCGGCGaGUCGaagcGGUCg--CGGCAg -3'
miRNA:   3'- cGCCAGCUGC-CAGU----CCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 62485 0.7 0.961923
Target:  5'- aGCGGccgCGGCGGUagcguuGGUCU-UCGGCAu -3'
miRNA:   3'- -CGCCa--GCUGCCAgu----CCAGAuAGUUGU- -5'
16067 5' -52 NC_004065.1 + 27208 0.7 0.958386
Target:  5'- aUGG-CGGCGGUCGuGGUCgg-CAGCGu -3'
miRNA:   3'- cGCCaGCUGCCAGU-CCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 74866 0.7 0.950651
Target:  5'- gGCGGUgguaGACGGgCAGGUCg--CAGCc -3'
miRNA:   3'- -CGCCAg---CUGCCaGUCCAGauaGUUGu -5'
16067 5' -52 NC_004065.1 + 198374 0.7 0.950651
Target:  5'- gGUGGUCGGCgucaacgccgugGGcCAGGUCUucaccuacgagAUCAACGa -3'
miRNA:   3'- -CGCCAGCUG------------CCaGUCCAGA-----------UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 171974 0.71 0.946446
Target:  5'- gGCGG-CGGCGGagGGGUC-GUCGugAa -3'
miRNA:   3'- -CGCCaGCUGCCagUCCAGaUAGUugU- -5'
16067 5' -52 NC_004065.1 + 59594 0.71 0.937344
Target:  5'- aUGGUCGACGaaCGGcuGUCUGUCGACGc -3'
miRNA:   3'- cGCCAGCUGCcaGUC--CAGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 136661 0.71 0.932445
Target:  5'- gGUGGcgagCGACGGgCGGGUCUGgccggCGGCGg -3'
miRNA:   3'- -CGCCa---GCUGCCaGUCCAGAUa----GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.