miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 5' -52 NC_004065.1 + 4461 0.7 0.96836
Target:  5'- cGCGGgu--CGGUCAGGUUccgCAACAg -3'
miRNA:   3'- -CGCCagcuGCCAGUCCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 6481 0.66 0.995981
Target:  5'- cGCGuuGUCGcgaaccgcACGGUCGGGUCgcggcCGGCAc -3'
miRNA:   3'- -CGC--CAGC--------UGCCAGUCCAGaua--GUUGU- -5'
16067 5' -52 NC_004065.1 + 22923 0.75 0.78839
Target:  5'- gGCGGUCGGCGGUUccGUCUcGUCGuCAg -3'
miRNA:   3'- -CGCCAGCUGCCAGucCAGA-UAGUuGU- -5'
16067 5' -52 NC_004065.1 + 24970 0.68 0.984824
Target:  5'- uCGGUCGugGGUgGGcGUCccUCGGCc -3'
miRNA:   3'- cGCCAGCugCCAgUC-CAGauAGUUGu -5'
16067 5' -52 NC_004065.1 + 27208 0.7 0.958386
Target:  5'- aUGG-CGGCGGUCGuGGUCgg-CAGCGu -3'
miRNA:   3'- cGCCaGCUGCCAGU-CCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 30286 0.66 0.996555
Target:  5'- cGgGGUCGugGGccugCGGGUCgggCAGg- -3'
miRNA:   3'- -CgCCAGCugCCa---GUCCAGauaGUUgu -5'
16067 5' -52 NC_004065.1 + 33012 0.68 0.989422
Target:  5'- aCGGUCGuCGGUCGGaucGUCauccgCAACAa -3'
miRNA:   3'- cGCCAGCuGCCAGUC---CAGaua--GUUGU- -5'
16067 5' -52 NC_004065.1 + 35627 0.66 0.997502
Target:  5'- gGCGG-CGGCGG-CGGGgaugUcAUCGGCGa -3'
miRNA:   3'- -CGCCaGCUGCCaGUCCa---GaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 36728 0.66 0.99706
Target:  5'- aCGGcgCGACGGUUcucUCUGUCAACu -3'
miRNA:   3'- cGCCa-GCUGCCAGuccAGAUAGUUGu -5'
16067 5' -52 NC_004065.1 + 38440 0.67 0.991825
Target:  5'- cGUGGaCGGCGG-CAGGaggCUcAUCGGCAc -3'
miRNA:   3'- -CGCCaGCUGCCaGUCCa--GA-UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 40180 0.67 0.994598
Target:  5'- cGCGG-CGACGaG-CAGGUCccgAUCGAa- -3'
miRNA:   3'- -CGCCaGCUGC-CaGUCCAGa--UAGUUgu -5'
16067 5' -52 NC_004065.1 + 40569 0.66 0.996555
Target:  5'- cGCGGUCGuACcGUCgacGGGUCUcUCGAg- -3'
miRNA:   3'- -CGCCAGC-UGcCAG---UCCAGAuAGUUgu -5'
16067 5' -52 NC_004065.1 + 51665 0.68 0.982994
Target:  5'- cGCGGguuccUUGAUGGUCAGGUguucguaggagCUAUC-GCAg -3'
miRNA:   3'- -CGCC-----AGCUGCCAGUCCA-----------GAUAGuUGU- -5'
16067 5' -52 NC_004065.1 + 59594 0.71 0.937344
Target:  5'- aUGGUCGACGaaCGGcuGUCUGUCGACGc -3'
miRNA:   3'- cGCCAGCUGCcaGUC--CAGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 62485 0.7 0.961923
Target:  5'- aGCGGccgCGGCGGUagcguuGGUCU-UCGGCAu -3'
miRNA:   3'- -CGCCa--GCUGCCAgu----CCAGAuAGUUGU- -5'
16067 5' -52 NC_004065.1 + 68110 0.68 0.9865
Target:  5'- gGCGGUgCaGCGGUUcgagagccugauGGGUCUGUCGgACGa -3'
miRNA:   3'- -CGCCA-GcUGCCAG------------UCCAGAUAGU-UGU- -5'
16067 5' -52 NC_004065.1 + 74866 0.7 0.950651
Target:  5'- gGCGGUgguaGACGGgCAGGUCg--CAGCc -3'
miRNA:   3'- -CGCCAg---CUGCCaGUCCAGauaGUUGu -5'
16067 5' -52 NC_004065.1 + 88633 0.66 0.99706
Target:  5'- cGCGGcUCGAUGGcgCAGaGUUUcugCAGCAu -3'
miRNA:   3'- -CGCC-AGCUGCCa-GUC-CAGAua-GUUGU- -5'
16067 5' -52 NC_004065.1 + 91635 1.12 0.008009
Target:  5'- cGCGGUCGACGGUCAGGUCUAUCAACAg -3'
miRNA:   3'- -CGCCAGCUGCCAGUCCAGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 100376 0.66 0.995981
Target:  5'- cCGGUCGACGGcCA-GUCUGUg---- -3'
miRNA:   3'- cGCCAGCUGCCaGUcCAGAUAguugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.