miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16067 5' -52 NC_004065.1 + 109142 0.66 0.996555
Target:  5'- gGCGGgUGACGG-CGGuUCcGUCGACAa -3'
miRNA:   3'- -CGCCaGCUGCCaGUCcAGaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 24970 0.68 0.984824
Target:  5'- uCGGUCGugGGUgGGcGUCccUCGGCc -3'
miRNA:   3'- cGCCAGCugCCAgUC-CAGauAGUUGu -5'
16067 5' -52 NC_004065.1 + 68110 0.68 0.9865
Target:  5'- gGCGGUgCaGCGGUUcgagagccugauGGGUCUGUCGgACGa -3'
miRNA:   3'- -CGCCA-GcUGCCAG------------UCCAGAUAGU-UGU- -5'
16067 5' -52 NC_004065.1 + 213299 0.67 0.990685
Target:  5'- cGUGGaCGACGGUUcGGUC-GUCggUAg -3'
miRNA:   3'- -CGCCaGCUGCCAGuCCAGaUAGuuGU- -5'
16067 5' -52 NC_004065.1 + 38440 0.67 0.991825
Target:  5'- cGUGGaCGGCGG-CAGGaggCUcAUCGGCAc -3'
miRNA:   3'- -CGCCaGCUGCCaGUCCa--GA-UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 120934 0.67 0.991825
Target:  5'- uGCGG-CGugcacACGGUCGGGUCcgggUAGCGg -3'
miRNA:   3'- -CGCCaGC-----UGCCAGUCCAGaua-GUUGU- -5'
16067 5' -52 NC_004065.1 + 170288 0.67 0.992755
Target:  5'- cGCGGUCGGCaccaucgccgccgGGUC-GGUaaacAUCGGCAg -3'
miRNA:   3'- -CGCCAGCUG-------------CCAGuCCAga--UAGUUGU- -5'
16067 5' -52 NC_004065.1 + 227512 0.67 0.992853
Target:  5'- aCGGUUGACGGUgAGGaUUUAgUGGCAu -3'
miRNA:   3'- cGCCAGCUGCCAgUCC-AGAUaGUUGU- -5'
16067 5' -52 NC_004065.1 + 40569 0.66 0.996555
Target:  5'- cGCGGUCGuACcGUCgacGGGUCUcUCGAg- -3'
miRNA:   3'- -CGCCAGC-UGcCAG---UCCAGAuAGUUgu -5'
16067 5' -52 NC_004065.1 + 161025 0.68 0.983745
Target:  5'- gGCGGcaUCGACGuG-CAGGggccggucgacgcuaUCUAUCGGCAu -3'
miRNA:   3'- -CGCC--AGCUGC-CaGUCC---------------AGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 128626 0.68 0.982994
Target:  5'- aCGGUCGuuggcggaGGUCAGGggaccgCcGUCAGCAg -3'
miRNA:   3'- cGCCAGCug------CCAGUCCa-----GaUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 51665 0.68 0.982994
Target:  5'- cGCGGguuccUUGAUGGUCAGGUguucguaggagCUAUC-GCAg -3'
miRNA:   3'- -CGCC-----AGCUGCCAGUCCA-----------GAUAGuUGU- -5'
16067 5' -52 NC_004065.1 + 145232 0.76 0.741567
Target:  5'- cGCGGUCGACGGggCGGGUCaaauagUGagAGCAu -3'
miRNA:   3'- -CGCCAGCUGCCa-GUCCAG------AUagUUGU- -5'
16067 5' -52 NC_004065.1 + 22923 0.75 0.78839
Target:  5'- gGCGGUCGGCGGUUccGUCUcGUCGuCAg -3'
miRNA:   3'- -CGCCAGCUGCCAGucCAGA-UAGUuGU- -5'
16067 5' -52 NC_004065.1 + 196844 0.73 0.863324
Target:  5'- uGCGGgCGACGGUaCAGcGUCUcgCAguGCAg -3'
miRNA:   3'- -CGCCaGCUGCCA-GUC-CAGAuaGU--UGU- -5'
16067 5' -52 NC_004065.1 + 59594 0.71 0.937344
Target:  5'- aUGGUCGACGaaCGGcuGUCUGUCGACGc -3'
miRNA:   3'- cGCCAGCUGCcaGUC--CAGAUAGUUGU- -5'
16067 5' -52 NC_004065.1 + 74866 0.7 0.950651
Target:  5'- gGCGGUgguaGACGGgCAGGUCg--CAGCc -3'
miRNA:   3'- -CGCCAg---CUGCCaGUCCAGauaGUUGu -5'
16067 5' -52 NC_004065.1 + 62485 0.7 0.961923
Target:  5'- aGCGGccgCGGCGGUagcguuGGUCU-UCGGCAu -3'
miRNA:   3'- -CGCCa--GCUGCCAgu----CCAGAuAGUUGU- -5'
16067 5' -52 NC_004065.1 + 197937 0.7 0.961923
Target:  5'- uCGGUCGGCGaGUCGaagcGGUCg--CGGCAg -3'
miRNA:   3'- cGCCAGCUGC-CAGU----CCAGauaGUUGU- -5'
16067 5' -52 NC_004065.1 + 201848 0.68 0.982994
Target:  5'- uGCGGUacguggacagaUGGCGGuUCAGGUCguagccgGUCAcGCAg -3'
miRNA:   3'- -CGCCA-----------GCUGCC-AGUCCAGa------UAGU-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.