miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 62016 0.66 0.758098
Target:  5'- -aCCG-GCCCGaGaCGCGUC-GACGGa- -3'
miRNA:   3'- gaGGCuCGGGC-C-GCGCAGuCUGCCgu -5'
16068 3' -62.5 NC_004065.1 + 105214 0.66 0.758098
Target:  5'- gUUCGuggacGCCCGGCGgaCGUCGGACGa-- -3'
miRNA:   3'- gAGGCu----CGGGCCGC--GCAGUCUGCcgu -5'
16068 3' -62.5 NC_004065.1 + 185664 0.66 0.758098
Target:  5'- gUCCGAGCaCGGaGCaGguaAGACGGCGg -3'
miRNA:   3'- gAGGCUCGgGCCgCG-Cag-UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 120544 0.66 0.758098
Target:  5'- uCUCCGGuguGCCggcggcgguCGGCGCGagCGGGCGGg- -3'
miRNA:   3'- -GAGGCU---CGG---------GCCGCGCa-GUCUGCCgu -5'
16068 3' -62.5 NC_004065.1 + 66742 0.66 0.749174
Target:  5'- gUCgGAcCCCGGCgGCGUCgcgaccgaagAGACGGUc -3'
miRNA:   3'- gAGgCUcGGGCCG-CGCAG----------UCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 32342 0.66 0.749174
Target:  5'- -gUCGAGUCgagCGGCG-GUCGGuACGGCGa -3'
miRNA:   3'- gaGGCUCGG---GCCGCgCAGUC-UGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 104899 0.66 0.749174
Target:  5'- -gCUGGGCgaCGGCGCGguggugCcGGCGGCGu -3'
miRNA:   3'- gaGGCUCGg-GCCGCGCa-----GuCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 35101 0.66 0.749174
Target:  5'- uCUCUGuGCgagCCGGUGUaUCgAGACGGCGg -3'
miRNA:   3'- -GAGGCuCG---GGCCGCGcAG-UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 65546 0.66 0.749174
Target:  5'- -gCUGAcGCUgGGCGCGUC-GcCGGCGg -3'
miRNA:   3'- gaGGCU-CGGgCCGCGCAGuCuGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 49718 0.66 0.749174
Target:  5'- uCUCCauGAuGCCCGGCGagaGuUCGGAcCGGUg -3'
miRNA:   3'- -GAGG--CU-CGGGCCGCg--C-AGUCU-GCCGu -5'
16068 3' -62.5 NC_004065.1 + 47144 0.66 0.749174
Target:  5'- uCUCCGAGCUCGuGgGCGa-AGGCguGGCGa -3'
miRNA:   3'- -GAGGCUCGGGC-CgCGCagUCUG--CCGU- -5'
16068 3' -62.5 NC_004065.1 + 56376 0.66 0.749174
Target:  5'- -aCgGGGUCCGGCaGgGUCGGA-GGCGc -3'
miRNA:   3'- gaGgCUCGGGCCG-CgCAGUCUgCCGU- -5'
16068 3' -62.5 NC_004065.1 + 117788 0.66 0.740161
Target:  5'- -gCCGAGacaucaUCGGUcacccCGUCGGACGGCGg -3'
miRNA:   3'- gaGGCUCg-----GGCCGc----GCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 104011 0.66 0.740161
Target:  5'- -aCUGAGUCUGGCGaCGaCAGugGGa- -3'
miRNA:   3'- gaGGCUCGGGCCGC-GCaGUCugCCgu -5'
16068 3' -62.5 NC_004065.1 + 109880 0.66 0.731066
Target:  5'- -aCCGGcgucGCCgCGGcCGCGUCGGGgGGUc -3'
miRNA:   3'- gaGGCU----CGG-GCC-GCGCAGUCUgCCGu -5'
16068 3' -62.5 NC_004065.1 + 34917 0.66 0.731066
Target:  5'- ----cAGCCCGGUGCGgugCGGACGaaGCAu -3'
miRNA:   3'- gaggcUCGGGCCGCGCa--GUCUGC--CGU- -5'
16068 3' -62.5 NC_004065.1 + 8292 0.66 0.731066
Target:  5'- aUCgGGGCCgCGGUguuaGCGgucguguaccUCAGACGGCc -3'
miRNA:   3'- gAGgCUCGG-GCCG----CGC----------AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 138979 0.66 0.731066
Target:  5'- uUCCGAGCCCacgcGGUGCuacgagcUCGGgACGGUg -3'
miRNA:   3'- gAGGCUCGGG----CCGCGc------AGUC-UGCCGu -5'
16068 3' -62.5 NC_004065.1 + 205520 0.66 0.731066
Target:  5'- aUCuUGGGgCCGGCGC-UCAGGgcCGGCGg -3'
miRNA:   3'- gAG-GCUCgGGCCGCGcAGUCU--GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 68566 0.66 0.731066
Target:  5'- -gCUGGGCCUGGCGag-CAacgcGGCGGCGg -3'
miRNA:   3'- gaGGCUCGGGCCGCgcaGU----CUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.