Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 71861 | 0.66 | 0.712662 |
Target: 5'- aUCCGgaaAGCgCGGCcgaccagcGCGaCAGACGGCu -3' miRNA: 3'- gAGGC---UCGgGCCG--------CGCaGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 153611 | 0.66 | 0.731066 |
Target: 5'- -aUCGGGUCggcucgggCGGCGCcacUCGGACGGCGg -3' miRNA: 3'- gaGGCUCGG--------GCCGCGc--AGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 105214 | 0.66 | 0.758098 |
Target: 5'- gUUCGuggacGCCCGGCGgaCGUCGGACGa-- -3' miRNA: 3'- gAGGCu----CGGGCCGC--GCAGUCUGCcgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 131860 | 0.66 | 0.712662 |
Target: 5'- -gCUGAGCCUaGGCgGCGgu-GGCGGCGg -3' miRNA: 3'- gaGGCUCGGG-CCG-CGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 185664 | 0.66 | 0.758098 |
Target: 5'- gUCCGAGCaCGGaGCaGguaAGACGGCGg -3' miRNA: 3'- gAGGCUCGgGCCgCG-Cag-UCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 8292 | 0.66 | 0.731066 |
Target: 5'- aUCgGGGCCgCGGUguuaGCGgucguguaccUCAGACGGCc -3' miRNA: 3'- gAGgCUCGG-GCCG----CGC----------AGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 114801 | 0.66 | 0.712662 |
Target: 5'- -cCCGgcgguaagcAGCCCGGCGguaugcccCGUCGcGGCGGCc -3' miRNA: 3'- gaGGC---------UCGGGCCGC--------GCAGU-CUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 116305 | 0.66 | 0.712662 |
Target: 5'- uCUCCGAGgugUCGGCGuCGgc-GGCGGCAg -3' miRNA: 3'- -GAGGCUCg--GGCCGC-GCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 125898 | 0.66 | 0.712662 |
Target: 5'- uCUCCGccgugcuguaGGCCCGGC-CGcUCGGcACGuGCAg -3' miRNA: 3'- -GAGGC----------UCGGGCCGcGC-AGUC-UGC-CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 120544 | 0.66 | 0.758098 |
Target: 5'- uCUCCGGuguGCCggcggcgguCGGCGCGagCGGGCGGg- -3' miRNA: 3'- -GAGGCU---CGG---------GCCGCGCa-GUCUGCCgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 65546 | 0.66 | 0.749174 |
Target: 5'- -gCUGAcGCUgGGCGCGUC-GcCGGCGg -3' miRNA: 3'- gaGGCU-CGGgCCGCGCAGuCuGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 49718 | 0.66 | 0.749174 |
Target: 5'- uCUCCauGAuGCCCGGCGagaGuUCGGAcCGGUg -3' miRNA: 3'- -GAGG--CU-CGGGCCGCg--C-AGUCU-GCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 68566 | 0.66 | 0.731066 |
Target: 5'- -gCUGGGCCUGGCGag-CAacgcGGCGGCGg -3' miRNA: 3'- gaGGCUCGGGCCGCgcaGU----CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 138979 | 0.66 | 0.731066 |
Target: 5'- uUCCGAGCCCacgcGGUGCuacgagcUCGGgACGGUg -3' miRNA: 3'- gAGGCUCGGG----CCGCGc------AGUC-UGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 146737 | 0.66 | 0.731066 |
Target: 5'- gCUCCGucGCCCacaucuauguGG-GCGUCGG-CGGCGu -3' miRNA: 3'- -GAGGCu-CGGG----------CCgCGCAGUCuGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 34917 | 0.66 | 0.731066 |
Target: 5'- ----cAGCCCGGUGCGgugCGGACGaaGCAu -3' miRNA: 3'- gaggcUCGGGCCGCGCa--GUCUGC--CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 109880 | 0.66 | 0.731066 |
Target: 5'- -aCCGGcgucGCCgCGGcCGCGUCGGGgGGUc -3' miRNA: 3'- gaGGCU----CGG-GCC-GCGCAGUCUgCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 104011 | 0.66 | 0.740161 |
Target: 5'- -aCUGAGUCUGGCGaCGaCAGugGGa- -3' miRNA: 3'- gaGGCUCGGGCCGC-GCaGUCugCCgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 56376 | 0.66 | 0.749174 |
Target: 5'- -aCgGGGUCCGGCaGgGUCGGA-GGCGc -3' miRNA: 3'- gaGgCUCGGGCCG-CgCAGUCUgCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 47144 | 0.66 | 0.749174 |
Target: 5'- uCUCCGAGCUCGuGgGCGa-AGGCguGGCGa -3' miRNA: 3'- -GAGGCUCGGGC-CgCGCagUCUG--CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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