miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 92101 1.07 0.001662
Target:  5'- gCUCCGAGCCCGGCGCGUCAGACGGCAu -3'
miRNA:   3'- -GAGGCUCGGGCCGCGCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 73290 0.76 0.221954
Target:  5'- uUCCGAGCCCugucuaGCGCGaUCAuGGCGGCGa -3'
miRNA:   3'- gAGGCUCGGGc-----CGCGC-AGU-CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 97883 0.75 0.259751
Target:  5'- gUCCaGGCUCGGCGCGUUguuGAUGGCGa -3'
miRNA:   3'- gAGGcUCGGGCCGCGCAGu--CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 120443 0.74 0.296191
Target:  5'- gUCCGGGCCCucuUGCuGUCGGGCGGCGg -3'
miRNA:   3'- gAGGCUCGGGcc-GCG-CAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 132154 0.73 0.350773
Target:  5'- -gCCGAGCCUGGaCGUGgu-GGCGGCGa -3'
miRNA:   3'- gaGGCUCGGGCC-GCGCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 230013 0.72 0.373006
Target:  5'- -cCCGggGGCCCGcGCGCacUCAGACGGCc -3'
miRNA:   3'- gaGGC--UCGGGC-CGCGc-AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 191903 0.72 0.380627
Target:  5'- -gCCGaAGUCCGGCGCGaCGuACGGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 18128 0.72 0.388351
Target:  5'- cCUCCGGGCCCGcCGCG--GGACGGgAu -3'
miRNA:   3'- -GAGGCUCGGGCcGCGCagUCUGCCgU- -5'
16068 3' -62.5 NC_004065.1 + 198392 0.72 0.404104
Target:  5'- -cCCGuAGCCCGGCGuCGUCAG-CcGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGC-GCAGUCuGcCGU- -5'
16068 3' -62.5 NC_004065.1 + 151105 0.71 0.445197
Target:  5'- -cCCGAGCUCGGCGac---GACGGCAg -3'
miRNA:   3'- gaGGCUCGGGCCGCgcaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 31567 0.71 0.453694
Target:  5'- uCUCCGA-CCCgaacgcggacgcGGCGaCGUCGGugGGCu -3'
miRNA:   3'- -GAGGCUcGGG------------CCGC-GCAGUCugCCGu -5'
16068 3' -62.5 NC_004065.1 + 161286 0.71 0.453694
Target:  5'- gUCCGAGUCCGGCagcgacccCGUCAGGauGCGg -3'
miRNA:   3'- gAGGCUCGGGCCGc-------GCAGUCUgcCGU- -5'
16068 3' -62.5 NC_004065.1 + 119249 0.71 0.461416
Target:  5'- gCUCCGAaacgGgCCGcGCGCcuuauauGUCAGGCGGCGc -3'
miRNA:   3'- -GAGGCU----CgGGC-CGCG-------CAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 1 0.71 0.462278
Target:  5'- ----GGGCCCGcGCGCacUCAGACGGCc -3'
miRNA:   3'- gaggCUCGGGC-CGCGc-AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 209379 0.71 0.470947
Target:  5'- aCUCCGAGgCCuGCGaCGg-AGACGGCGa -3'
miRNA:   3'- -GAGGCUCgGGcCGC-GCagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116715 0.7 0.488526
Target:  5'- -cCCGcGUCCGGCGCG-CGaGCGGCGu -3'
miRNA:   3'- gaGGCuCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 24739 0.7 0.506408
Target:  5'- --gCGAGUCUGGCGCacucGUUGGGCGGCc -3'
miRNA:   3'- gagGCUCGGGCCGCG----CAGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 128138 0.69 0.532814
Target:  5'- gCUCgGAGgagccgcCCCGGCGuCGUCGucugcGGCGGCGa -3'
miRNA:   3'- -GAGgCUC-------GGGCCGC-GCAGU-----CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 144053 0.69 0.533734
Target:  5'- gUUCGgcaagcaguuGGCCUuguGGCGCGUCgaGGACGGCGa -3'
miRNA:   3'- gAGGC----------UCGGG---CCGCGCAG--UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 196859 0.69 0.542961
Target:  5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3'
miRNA:   3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.