Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 203115 | 0.69 | 0.552239 |
Target: 5'- uUCgGGGUCCGGCGUgcgGUCGaGCGGCc -3' miRNA: 3'- gAGgCUCGGGCCGCG---CAGUcUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 484 | 0.69 | 0.560631 |
Target: 5'- cCUCCGGGCCgCGcGcCGCGUCcgcgggaAGGCGGgGu -3' miRNA: 3'- -GAGGCUCGG-GC-C-GCGCAG-------UCUGCCgU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 227093 | 0.69 | 0.570934 |
Target: 5'- -gCCGAGCCCGGUGCcaggaaccuuGUacccacaGGAUGGCc -3' miRNA: 3'- gaGGCUCGGGCCGCG----------CAg------UCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 168350 | 0.69 | 0.570934 |
Target: 5'- uCUCCGAuCCCGGUGguaaggacgaGUUAGACGGUu -3' miRNA: 3'- -GAGGCUcGGGCCGCg---------CAGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 26437 | 0.69 | 0.574692 |
Target: 5'- gUCCGAGUCCGGacuGCGguacgCAuacacguugguggucGACGGCAc -3' miRNA: 3'- gAGGCUCGGGCCg--CGCa----GU---------------CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 109220 | 0.69 | 0.58034 |
Target: 5'- uUCCu-GCUCGGCGaCGggAGACGGCGg -3' miRNA: 3'- gAGGcuCGGGCCGC-GCagUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 80312 | 0.68 | 0.599243 |
Target: 5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3' miRNA: 3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 182465 | 0.68 | 0.599243 |
Target: 5'- cCUCUGGGCCUGGguCGC-UgGGugGGCGg -3' miRNA: 3'- -GAGGCUCGGGCC--GCGcAgUCugCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 97938 | 0.68 | 0.608728 |
Target: 5'- gUCCG-GCaCCGGCGUGgcagCGGugGGg- -3' miRNA: 3'- gAGGCuCG-GGCCGCGCa---GUCugCCgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 197770 | 0.68 | 0.608728 |
Target: 5'- aCUCgGAGCCguccgaugauggCGGCGaGUCcGACGGCu -3' miRNA: 3'- -GAGgCUCGG------------GCCGCgCAGuCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128437 | 0.68 | 0.608728 |
Target: 5'- -aCCGAGUCUGaGCGCGgCGGA-GGCGu -3' miRNA: 3'- gaGGCUCGGGC-CGCGCaGUCUgCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 57388 | 0.68 | 0.618229 |
Target: 5'- uCUCCgGAGCUcgCGGU-CGUCAcGGCGGCAu -3' miRNA: 3'- -GAGG-CUCGG--GCCGcGCAGU-CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 165330 | 0.68 | 0.626787 |
Target: 5'- aCUCCGAGCCgagcugcuggaucUGGUGgaUGUCGGugGuGCAg -3' miRNA: 3'- -GAGGCUCGG-------------GCCGC--GCAGUCugC-CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 151533 | 0.68 | 0.627739 |
Target: 5'- -gCCG-GCCgGGCgGUGUCGGGCGcGCu -3' miRNA: 3'- gaGGCuCGGgCCG-CGCAGUCUGC-CGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 139651 | 0.68 | 0.627739 |
Target: 5'- gCUCCaAGCUgugCGGCGCGUgcGGCGGCc -3' miRNA: 3'- -GAGGcUCGG---GCCGCGCAguCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 121059 | 0.68 | 0.627739 |
Target: 5'- gUCgGAGCCUGGCGuCGUgcccCAGGucguCGGCGu -3' miRNA: 3'- gAGgCUCGGGCCGC-GCA----GUCU----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 114908 | 0.68 | 0.637251 |
Target: 5'- uCUCgGuGGCuCCGGgGgGUgGGGCGGCAc -3' miRNA: 3'- -GAGgC-UCG-GGCCgCgCAgUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 67745 | 0.68 | 0.637251 |
Target: 5'- -gCCGAGCggCGcCGCGUCcGACGGCGu -3' miRNA: 3'- gaGGCUCGg-GCcGCGCAGuCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 146850 | 0.68 | 0.638202 |
Target: 5'- -gCCGGGagcgccuggucugcaUCGGCGCGUgaacgCGGGCGGCAg -3' miRNA: 3'- gaGGCUCg--------------GGCCGCGCA-----GUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 150221 | 0.68 | 0.64676 |
Target: 5'- aUCCGGGCCagCGGCGuCGUCAGGaucaGCc -3' miRNA: 3'- gAGGCUCGG--GCCGC-GCAGUCUgc--CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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