miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 8292 0.66 0.731066
Target:  5'- aUCgGGGCCgCGGUguuaGCGgucguguaccUCAGACGGCc -3'
miRNA:   3'- gAGgCUCGG-GCCG----CGC----------AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 205520 0.66 0.731066
Target:  5'- aUCuUGGGgCCGGCGC-UCAGGgcCGGCGg -3'
miRNA:   3'- gAG-GCUCgGGCCGCGcAGUCU--GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 131860 0.66 0.712662
Target:  5'- -gCUGAGCCUaGGCgGCGgu-GGCGGCGg -3'
miRNA:   3'- gaGGCUCGGG-CCG-CGCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 114801 0.66 0.712662
Target:  5'- -cCCGgcgguaagcAGCCCGGCGguaugcccCGUCGcGGCGGCc -3'
miRNA:   3'- gaGGC---------UCGGGCCGC--------GCAGU-CUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 57027 0.66 0.712662
Target:  5'- gCUCuCGAGCCaUGGCuCGUCGu-CGGCAc -3'
miRNA:   3'- -GAG-GCUCGG-GCCGcGCAGUcuGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116305 0.66 0.712662
Target:  5'- uCUCCGAGgugUCGGCGuCGgc-GGCGGCAg -3'
miRNA:   3'- -GAGGCUCg--GGCCGC-GCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 71861 0.66 0.712662
Target:  5'- aUCCGgaaAGCgCGGCcgaccagcGCGaCAGACGGCu -3'
miRNA:   3'- gAGGC---UCGgGCCG--------CGCaGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 125898 0.66 0.712662
Target:  5'- uCUCCGccgugcuguaGGCCCGGC-CGcUCGGcACGuGCAg -3'
miRNA:   3'- -GAGGC----------UCGGGCCGcGC-AGUC-UGC-CGU- -5'
16068 3' -62.5 NC_004065.1 + 135517 0.67 0.707092
Target:  5'- aCUCCGAGUCCaucGGaucgaccgucgacguCGaCGUCGGACGGgCGg -3'
miRNA:   3'- -GAGGCUCGGG---CC---------------GC-GCAGUCUGCC-GU- -5'
16068 3' -62.5 NC_004065.1 + 118629 0.67 0.703367
Target:  5'- aUCCG-GCCCGGuCGCG-CAuGACcuGGCu -3'
miRNA:   3'- gAGGCuCGGGCC-GCGCaGU-CUG--CCGu -5'
16068 3' -62.5 NC_004065.1 + 33655 0.67 0.703367
Target:  5'- gCUUCGAccGUCCGGCGCGcggGGAgGGCc -3'
miRNA:   3'- -GAGGCU--CGGGCCGCGCag-UCUgCCGu -5'
16068 3' -62.5 NC_004065.1 + 203070 0.67 0.703367
Target:  5'- gCUCCgGAGCCCGcCGCGgccgcCGGAgCGGUc -3'
miRNA:   3'- -GAGG-CUCGGGCcGCGCa----GUCU-GCCGu -5'
16068 3' -62.5 NC_004065.1 + 130578 0.67 0.68463
Target:  5'- aUCgCGGGCgaGGCGCGcgaugUCgAGGCGGCGu -3'
miRNA:   3'- gAG-GCUCGggCCGCGC-----AG-UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 163895 0.67 0.68463
Target:  5'- gUCCGcGGCCCaGCGCGcCAGcgccuCGGUg -3'
miRNA:   3'- gAGGC-UCGGGcCGCGCaGUCu----GCCGu -5'
16068 3' -62.5 NC_004065.1 + 616 0.67 0.675201
Target:  5'- --aCGcGCUCaGGCuCGUCAGGCGGCGg -3'
miRNA:   3'- gagGCuCGGG-CCGcGCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 132319 0.67 0.665742
Target:  5'- cCUCCuggacAGCCCGG-GCGgc-GGCGGCAg -3'
miRNA:   3'- -GAGGc----UCGGGCCgCGCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 229474 0.67 0.665742
Target:  5'- uCUCCGGGCCgGGCGCcgcucgucgCGGAagcuucacacgcUGGCGg -3'
miRNA:   3'- -GAGGCUCGGgCCGCGca-------GUCU------------GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 195839 0.67 0.665742
Target:  5'- gCUCCGucuGGCgCCGGCGCcGUCAacucACGGUc -3'
miRNA:   3'- -GAGGC---UCG-GGCCGCG-CAGUc---UGCCGu -5'
16068 3' -62.5 NC_004065.1 + 150221 0.68 0.64676
Target:  5'- aUCCGGGCCagCGGCGuCGUCAGGaucaGCc -3'
miRNA:   3'- gAGGCUCGG--GCCGC-GCAGUCUgc--CGu -5'
16068 3' -62.5 NC_004065.1 + 83211 0.68 0.64676
Target:  5'- aUUCGGGCCCGGgcaggcacaucCGCa--GGACGGCGa -3'
miRNA:   3'- gAGGCUCGGGCC-----------GCGcagUCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.