miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 146850 0.68 0.638202
Target:  5'- -gCCGGGagcgccuggucugcaUCGGCGCGUgaacgCGGGCGGCAg -3'
miRNA:   3'- gaGGCUCg--------------GGCCGCGCA-----GUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 67745 0.68 0.637251
Target:  5'- -gCCGAGCggCGcCGCGUCcGACGGCGu -3'
miRNA:   3'- gaGGCUCGg-GCcGCGCAGuCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 114908 0.68 0.637251
Target:  5'- uCUCgGuGGCuCCGGgGgGUgGGGCGGCAc -3'
miRNA:   3'- -GAGgC-UCG-GGCCgCgCAgUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 151533 0.68 0.627739
Target:  5'- -gCCG-GCCgGGCgGUGUCGGGCGcGCu -3'
miRNA:   3'- gaGGCuCGGgCCG-CGCAGUCUGC-CGu -5'
16068 3' -62.5 NC_004065.1 + 139651 0.68 0.627739
Target:  5'- gCUCCaAGCUgugCGGCGCGUgcGGCGGCc -3'
miRNA:   3'- -GAGGcUCGG---GCCGCGCAguCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 121059 0.68 0.627739
Target:  5'- gUCgGAGCCUGGCGuCGUgcccCAGGucguCGGCGu -3'
miRNA:   3'- gAGgCUCGGGCCGC-GCA----GUCU----GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 165330 0.68 0.626787
Target:  5'- aCUCCGAGCCgagcugcuggaucUGGUGgaUGUCGGugGuGCAg -3'
miRNA:   3'- -GAGGCUCGG-------------GCCGC--GCAGUCugC-CGU- -5'
16068 3' -62.5 NC_004065.1 + 57388 0.68 0.618229
Target:  5'- uCUCCgGAGCUcgCGGU-CGUCAcGGCGGCAu -3'
miRNA:   3'- -GAGG-CUCGG--GCCGcGCAGU-CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 128437 0.68 0.608728
Target:  5'- -aCCGAGUCUGaGCGCGgCGGA-GGCGu -3'
miRNA:   3'- gaGGCUCGGGC-CGCGCaGUCUgCCGU- -5'
16068 3' -62.5 NC_004065.1 + 197770 0.68 0.608728
Target:  5'- aCUCgGAGCCguccgaugauggCGGCGaGUCcGACGGCu -3'
miRNA:   3'- -GAGgCUCGG------------GCCGCgCAGuCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 97938 0.68 0.608728
Target:  5'- gUCCG-GCaCCGGCGUGgcagCGGugGGg- -3'
miRNA:   3'- gAGGCuCG-GGCCGCGCa---GUCugCCgu -5'
16068 3' -62.5 NC_004065.1 + 80312 0.68 0.599243
Target:  5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3'
miRNA:   3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 182465 0.68 0.599243
Target:  5'- cCUCUGGGCCUGGguCGC-UgGGugGGCGg -3'
miRNA:   3'- -GAGGCUCGGGCC--GCGcAgUCugCCGU- -5'
16068 3' -62.5 NC_004065.1 + 109220 0.69 0.58034
Target:  5'- uUCCu-GCUCGGCGaCGggAGACGGCGg -3'
miRNA:   3'- gAGGcuCGGGCCGC-GCagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 26437 0.69 0.574692
Target:  5'- gUCCGAGUCCGGacuGCGguacgCAuacacguugguggucGACGGCAc -3'
miRNA:   3'- gAGGCUCGGGCCg--CGCa----GU---------------CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 227093 0.69 0.570934
Target:  5'- -gCCGAGCCCGGUGCcaggaaccuuGUacccacaGGAUGGCc -3'
miRNA:   3'- gaGGCUCGGGCCGCG----------CAg------UCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 168350 0.69 0.570934
Target:  5'- uCUCCGAuCCCGGUGguaaggacgaGUUAGACGGUu -3'
miRNA:   3'- -GAGGCUcGGGCCGCg---------CAGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 484 0.69 0.560631
Target:  5'- cCUCCGGGCCgCGcGcCGCGUCcgcgggaAGGCGGgGu -3'
miRNA:   3'- -GAGGCUCGG-GC-C-GCGCAG-------UCUGCCgU- -5'
16068 3' -62.5 NC_004065.1 + 203115 0.69 0.552239
Target:  5'- uUCgGGGUCCGGCGUgcgGUCGaGCGGCc -3'
miRNA:   3'- gAGgCUCGGGCCGCG---CAGUcUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 196859 0.69 0.542961
Target:  5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3'
miRNA:   3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.