miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 67745 0.68 0.637251
Target:  5'- -gCCGAGCggCGcCGCGUCcGACGGCGu -3'
miRNA:   3'- gaGGCUCGg-GCcGCGCAGuCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 68566 0.66 0.731066
Target:  5'- -gCUGGGCCUGGCGag-CAacgcGGCGGCGg -3'
miRNA:   3'- gaGGCUCGGGCCGCgcaGU----CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 71861 0.66 0.712662
Target:  5'- aUCCGgaaAGCgCGGCcgaccagcGCGaCAGACGGCu -3'
miRNA:   3'- gAGGC---UCGgGCCG--------CGCaGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 73290 0.76 0.221954
Target:  5'- uUCCGAGCCCugucuaGCGCGaUCAuGGCGGCGa -3'
miRNA:   3'- gAGGCUCGGGc-----CGCGC-AGU-CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 80312 0.68 0.599243
Target:  5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3'
miRNA:   3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 83211 0.68 0.64676
Target:  5'- aUUCGGGCCCGGgcaggcacaucCGCa--GGACGGCGa -3'
miRNA:   3'- gAGGCUCGGGCC-----------GCGcagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 92101 1.07 0.001662
Target:  5'- gCUCCGAGCCCGGCGCGUCAGACGGCAu -3'
miRNA:   3'- -GAGGCUCGGGCCGCGCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 97883 0.75 0.259751
Target:  5'- gUCCaGGCUCGGCGCGUUguuGAUGGCGa -3'
miRNA:   3'- gAGGcUCGGGCCGCGCAGu--CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 97938 0.68 0.608728
Target:  5'- gUCCG-GCaCCGGCGUGgcagCGGugGGg- -3'
miRNA:   3'- gAGGCuCG-GGCCGCGCa---GUCugCCgu -5'
16068 3' -62.5 NC_004065.1 + 104011 0.66 0.740161
Target:  5'- -aCUGAGUCUGGCGaCGaCAGugGGa- -3'
miRNA:   3'- gaGGCUCGGGCCGC-GCaGUCugCCgu -5'
16068 3' -62.5 NC_004065.1 + 104899 0.66 0.749174
Target:  5'- -gCUGGGCgaCGGCGCGguggugCcGGCGGCGu -3'
miRNA:   3'- gaGGCUCGg-GCCGCGCa-----GuCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 105214 0.66 0.758098
Target:  5'- gUUCGuggacGCCCGGCGgaCGUCGGACGa-- -3'
miRNA:   3'- gAGGCu----CGGGCCGC--GCAGUCUGCcgu -5'
16068 3' -62.5 NC_004065.1 + 109220 0.69 0.58034
Target:  5'- uUCCu-GCUCGGCGaCGggAGACGGCGg -3'
miRNA:   3'- gAGGcuCGGGCCGC-GCagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 109880 0.66 0.731066
Target:  5'- -aCCGGcgucGCCgCGGcCGCGUCGGGgGGUc -3'
miRNA:   3'- gaGGCU----CGG-GCC-GCGCAGUCUgCCGu -5'
16068 3' -62.5 NC_004065.1 + 114801 0.66 0.712662
Target:  5'- -cCCGgcgguaagcAGCCCGGCGguaugcccCGUCGcGGCGGCc -3'
miRNA:   3'- gaGGC---------UCGGGCCGC--------GCAGU-CUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 114908 0.68 0.637251
Target:  5'- uCUCgGuGGCuCCGGgGgGUgGGGCGGCAc -3'
miRNA:   3'- -GAGgC-UCG-GGCCgCgCAgUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116305 0.66 0.712662
Target:  5'- uCUCCGAGgugUCGGCGuCGgc-GGCGGCAg -3'
miRNA:   3'- -GAGGCUCg--GGCCGC-GCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116715 0.7 0.488526
Target:  5'- -cCCGcGUCCGGCGCG-CGaGCGGCGu -3'
miRNA:   3'- gaGGCuCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 117788 0.66 0.740161
Target:  5'- -gCCGAGacaucaUCGGUcacccCGUCGGACGGCGg -3'
miRNA:   3'- gaGGCUCg-----GGCCGc----GCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 118629 0.67 0.703367
Target:  5'- aUCCG-GCCCGGuCGCG-CAuGACcuGGCu -3'
miRNA:   3'- gAGGCuCGGGCC-GCGCaGU-CUG--CCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.