Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 119249 | 0.71 | 0.461416 |
Target: 5'- gCUCCGAaacgGgCCGcGCGCcuuauauGUCAGGCGGCGc -3' miRNA: 3'- -GAGGCU----CgGGC-CGCG-------CAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 120443 | 0.74 | 0.296191 |
Target: 5'- gUCCGGGCCCucuUGCuGUCGGGCGGCGg -3' miRNA: 3'- gAGGCUCGGGcc-GCG-CAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 120544 | 0.66 | 0.758098 |
Target: 5'- uCUCCGGuguGCCggcggcgguCGGCGCGagCGGGCGGg- -3' miRNA: 3'- -GAGGCU---CGG---------GCCGCGCa-GUCUGCCgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 121059 | 0.68 | 0.627739 |
Target: 5'- gUCgGAGCCUGGCGuCGUgcccCAGGucguCGGCGu -3' miRNA: 3'- gAGgCUCGGGCCGC-GCA----GUCU----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 125898 | 0.66 | 0.712662 |
Target: 5'- uCUCCGccgugcuguaGGCCCGGC-CGcUCGGcACGuGCAg -3' miRNA: 3'- -GAGGC----------UCGGGCCGcGC-AGUC-UGC-CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128138 | 0.69 | 0.532814 |
Target: 5'- gCUCgGAGgagccgcCCCGGCGuCGUCGucugcGGCGGCGa -3' miRNA: 3'- -GAGgCUC-------GGGCCGC-GCAGU-----CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128437 | 0.68 | 0.608728 |
Target: 5'- -aCCGAGUCUGaGCGCGgCGGA-GGCGu -3' miRNA: 3'- gaGGCUCGGGC-CGCGCaGUCUgCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 130578 | 0.67 | 0.68463 |
Target: 5'- aUCgCGGGCgaGGCGCGcgaugUCgAGGCGGCGu -3' miRNA: 3'- gAG-GCUCGggCCGCGC-----AG-UCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 131860 | 0.66 | 0.712662 |
Target: 5'- -gCUGAGCCUaGGCgGCGgu-GGCGGCGg -3' miRNA: 3'- gaGGCUCGGG-CCG-CGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 132154 | 0.73 | 0.350773 |
Target: 5'- -gCCGAGCCUGGaCGUGgu-GGCGGCGa -3' miRNA: 3'- gaGGCUCGGGCC-GCGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 132319 | 0.67 | 0.665742 |
Target: 5'- cCUCCuggacAGCCCGG-GCGgc-GGCGGCAg -3' miRNA: 3'- -GAGGc----UCGGGCCgCGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 135517 | 0.67 | 0.707092 |
Target: 5'- aCUCCGAGUCCaucGGaucgaccgucgacguCGaCGUCGGACGGgCGg -3' miRNA: 3'- -GAGGCUCGGG---CC---------------GC-GCAGUCUGCC-GU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 138979 | 0.66 | 0.731066 |
Target: 5'- uUCCGAGCCCacgcGGUGCuacgagcUCGGgACGGUg -3' miRNA: 3'- gAGGCUCGGG----CCGCGc------AGUC-UGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 139651 | 0.68 | 0.627739 |
Target: 5'- gCUCCaAGCUgugCGGCGCGUgcGGCGGCc -3' miRNA: 3'- -GAGGcUCGG---GCCGCGCAguCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 144053 | 0.69 | 0.533734 |
Target: 5'- gUUCGgcaagcaguuGGCCUuguGGCGCGUCgaGGACGGCGa -3' miRNA: 3'- gAGGC----------UCGGG---CCGCGCAG--UCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 146737 | 0.66 | 0.731066 |
Target: 5'- gCUCCGucGCCCacaucuauguGG-GCGUCGG-CGGCGu -3' miRNA: 3'- -GAGGCu-CGGG----------CCgCGCAGUCuGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 146850 | 0.68 | 0.638202 |
Target: 5'- -gCCGGGagcgccuggucugcaUCGGCGCGUgaacgCGGGCGGCAg -3' miRNA: 3'- gaGGCUCg--------------GGCCGCGCA-----GUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 150221 | 0.68 | 0.64676 |
Target: 5'- aUCCGGGCCagCGGCGuCGUCAGGaucaGCc -3' miRNA: 3'- gAGGCUCGG--GCCGC-GCAGUCUgc--CGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 151105 | 0.71 | 0.445197 |
Target: 5'- -cCCGAGCUCGGCGac---GACGGCAg -3' miRNA: 3'- gaGGCUCGGGCCGCgcaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 151533 | 0.68 | 0.627739 |
Target: 5'- -gCCG-GCCgGGCgGUGUCGGGCGcGCu -3' miRNA: 3'- gaGGCuCGGgCCG-CGCAGUCUGC-CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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