miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 230013 0.72 0.373006
Target:  5'- -cCCGggGGCCCGcGCGCacUCAGACGGCc -3'
miRNA:   3'- gaGGC--UCGGGC-CGCGc-AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 229474 0.67 0.665742
Target:  5'- uCUCCGGGCCgGGCGCcgcucgucgCGGAagcuucacacgcUGGCGg -3'
miRNA:   3'- -GAGGCUCGGgCCGCGca-------GUCU------------GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 227093 0.69 0.570934
Target:  5'- -gCCGAGCCCGGUGCcaggaaccuuGUacccacaGGAUGGCc -3'
miRNA:   3'- gaGGCUCGGGCCGCG----------CAg------UCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 209379 0.71 0.470947
Target:  5'- aCUCCGAGgCCuGCGaCGg-AGACGGCGa -3'
miRNA:   3'- -GAGGCUCgGGcCGC-GCagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 205520 0.66 0.731066
Target:  5'- aUCuUGGGgCCGGCGC-UCAGGgcCGGCGg -3'
miRNA:   3'- gAG-GCUCgGGCCGCGcAGUCU--GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 203115 0.69 0.552239
Target:  5'- uUCgGGGUCCGGCGUgcgGUCGaGCGGCc -3'
miRNA:   3'- gAGgCUCGGGCCGCG---CAGUcUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 203070 0.67 0.703367
Target:  5'- gCUCCgGAGCCCGcCGCGgccgcCGGAgCGGUc -3'
miRNA:   3'- -GAGG-CUCGGGCcGCGCa----GUCU-GCCGu -5'
16068 3' -62.5 NC_004065.1 + 198392 0.72 0.404104
Target:  5'- -cCCGuAGCCCGGCGuCGUCAG-CcGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGC-GCAGUCuGcCGU- -5'
16068 3' -62.5 NC_004065.1 + 197770 0.68 0.608728
Target:  5'- aCUCgGAGCCguccgaugauggCGGCGaGUCcGACGGCu -3'
miRNA:   3'- -GAGgCUCGG------------GCCGCgCAGuCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 196859 0.69 0.542961
Target:  5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3'
miRNA:   3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 195839 0.67 0.665742
Target:  5'- gCUCCGucuGGCgCCGGCGCcGUCAacucACGGUc -3'
miRNA:   3'- -GAGGC---UCG-GGCCGCG-CAGUc---UGCCGu -5'
16068 3' -62.5 NC_004065.1 + 191903 0.72 0.380627
Target:  5'- -gCCGaAGUCCGGCGCGaCGuACGGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 185664 0.66 0.758098
Target:  5'- gUCCGAGCaCGGaGCaGguaAGACGGCGg -3'
miRNA:   3'- gAGGCUCGgGCCgCG-Cag-UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 182465 0.68 0.599243
Target:  5'- cCUCUGGGCCUGGguCGC-UgGGugGGCGg -3'
miRNA:   3'- -GAGGCUCGGGCC--GCGcAgUCugCCGU- -5'
16068 3' -62.5 NC_004065.1 + 168350 0.69 0.570934
Target:  5'- uCUCCGAuCCCGGUGguaaggacgaGUUAGACGGUu -3'
miRNA:   3'- -GAGGCUcGGGCCGCg---------CAGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 165330 0.68 0.626787
Target:  5'- aCUCCGAGCCgagcugcuggaucUGGUGgaUGUCGGugGuGCAg -3'
miRNA:   3'- -GAGGCUCGG-------------GCCGC--GCAGUCugC-CGU- -5'
16068 3' -62.5 NC_004065.1 + 163895 0.67 0.68463
Target:  5'- gUCCGcGGCCCaGCGCGcCAGcgccuCGGUg -3'
miRNA:   3'- gAGGC-UCGGGcCGCGCaGUCu----GCCGu -5'
16068 3' -62.5 NC_004065.1 + 161286 0.71 0.453694
Target:  5'- gUCCGAGUCCGGCagcgacccCGUCAGGauGCGg -3'
miRNA:   3'- gAGGCUCGGGCCGc-------GCAGUCUgcCGU- -5'
16068 3' -62.5 NC_004065.1 + 153611 0.66 0.731066
Target:  5'- -aUCGGGUCggcucgggCGGCGCcacUCGGACGGCGg -3'
miRNA:   3'- gaGGCUCGG--------GCCGCGc--AGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 151533 0.68 0.627739
Target:  5'- -gCCG-GCCgGGCgGUGUCGGGCGcGCu -3'
miRNA:   3'- gaGGCuCGGgCCG-CGCAGUCUGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.