Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 57027 | 0.66 | 0.712662 |
Target: 5'- gCUCuCGAGCCaUGGCuCGUCGu-CGGCAc -3' miRNA: 3'- -GAG-GCUCGG-GCCGcGCAGUcuGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 182465 | 0.68 | 0.599243 |
Target: 5'- cCUCUGGGCCUGGguCGC-UgGGugGGCGg -3' miRNA: 3'- -GAGGCUCGGGCC--GCGcAgUCugCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128437 | 0.68 | 0.608728 |
Target: 5'- -aCCGAGUCUGaGCGCGgCGGA-GGCGu -3' miRNA: 3'- gaGGCUCGGGC-CGCGCaGUCUgCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 57388 | 0.68 | 0.618229 |
Target: 5'- uCUCCgGAGCUcgCGGU-CGUCAcGGCGGCAu -3' miRNA: 3'- -GAGG-CUCGG--GCCGcGCAGU-CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 67745 | 0.68 | 0.637251 |
Target: 5'- -gCCGAGCggCGcCGCGUCcGACGGCGu -3' miRNA: 3'- gaGGCUCGg-GCcGCGCAGuCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 150221 | 0.68 | 0.64676 |
Target: 5'- aUCCGGGCCagCGGCGuCGUCAGGaucaGCc -3' miRNA: 3'- gAGGCUCGG--GCCGC-GCAGUCUgc--CGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 195839 | 0.67 | 0.665742 |
Target: 5'- gCUCCGucuGGCgCCGGCGCcGUCAacucACGGUc -3' miRNA: 3'- -GAGGC---UCG-GGCCGCG-CAGUc---UGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 135517 | 0.67 | 0.707092 |
Target: 5'- aCUCCGAGUCCaucGGaucgaccgucgacguCGaCGUCGGACGGgCGg -3' miRNA: 3'- -GAGGCUCGGG---CC---------------GC-GCAGUCUGCC-GU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 125898 | 0.66 | 0.712662 |
Target: 5'- uCUCCGccgugcuguaGGCCCGGC-CGcUCGGcACGuGCAg -3' miRNA: 3'- -GAGGC----------UCGGGCCGcGC-AGUC-UGC-CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 109220 | 0.69 | 0.58034 |
Target: 5'- uUCCu-GCUCGGCGaCGggAGACGGCGg -3' miRNA: 3'- gAGGcuCGGGCCGC-GCagUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 227093 | 0.69 | 0.570934 |
Target: 5'- -gCCGAGCCCGGUGCcaggaaccuuGUacccacaGGAUGGCc -3' miRNA: 3'- gaGGCUCGGGCCGCG----------CAg------UCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 168350 | 0.69 | 0.570934 |
Target: 5'- uCUCCGAuCCCGGUGguaaggacgaGUUAGACGGUu -3' miRNA: 3'- -GAGGCUcGGGCCGCg---------CAGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 73290 | 0.76 | 0.221954 |
Target: 5'- uUCCGAGCCCugucuaGCGCGaUCAuGGCGGCGa -3' miRNA: 3'- gAGGCUCGGGc-----CGCGC-AGU-CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 97883 | 0.75 | 0.259751 |
Target: 5'- gUCCaGGCUCGGCGCGUUguuGAUGGCGa -3' miRNA: 3'- gAGGcUCGGGCCGCGCAGu--CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 120443 | 0.74 | 0.296191 |
Target: 5'- gUCCGGGCCCucuUGCuGUCGGGCGGCGg -3' miRNA: 3'- gAGGCUCGGGcc-GCG-CAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 18128 | 0.72 | 0.388351 |
Target: 5'- cCUCCGGGCCCGcCGCG--GGACGGgAu -3' miRNA: 3'- -GAGGCUCGGGCcGCGCagUCUGCCgU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 198392 | 0.72 | 0.404104 |
Target: 5'- -cCCGuAGCCCGGCGuCGUCAG-CcGCAc -3' miRNA: 3'- gaGGC-UCGGGCCGC-GCAGUCuGcCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 151105 | 0.71 | 0.445197 |
Target: 5'- -cCCGAGCUCGGCGac---GACGGCAg -3' miRNA: 3'- gaGGCUCGGGCCGCgcaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 24739 | 0.7 | 0.506408 |
Target: 5'- --gCGAGUCUGGCGCacucGUUGGGCGGCc -3' miRNA: 3'- gagGCUCGGGCCGCG----CAGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 484 | 0.69 | 0.560631 |
Target: 5'- cCUCCGGGCCgCGcGcCGCGUCcgcgggaAGGCGGgGu -3' miRNA: 3'- -GAGGCUCGG-GC-C-GCGCAG-------UCUGCCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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