miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 97883 0.75 0.259751
Target:  5'- gUCCaGGCUCGGCGCGUUguuGAUGGCGa -3'
miRNA:   3'- gAGGcUCGGGCCGCGCAGu--CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 120443 0.74 0.296191
Target:  5'- gUCCGGGCCCucuUGCuGUCGGGCGGCGg -3'
miRNA:   3'- gAGGCUCGGGcc-GCG-CAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 18128 0.72 0.388351
Target:  5'- cCUCCGGGCCCGcCGCG--GGACGGgAu -3'
miRNA:   3'- -GAGGCUCGGGCcGCGCagUCUGCCgU- -5'
16068 3' -62.5 NC_004065.1 + 198392 0.72 0.404104
Target:  5'- -cCCGuAGCCCGGCGuCGUCAG-CcGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGC-GCAGUCuGcCGU- -5'
16068 3' -62.5 NC_004065.1 + 151105 0.71 0.445197
Target:  5'- -cCCGAGCUCGGCGac---GACGGCAg -3'
miRNA:   3'- gaGGCUCGGGCCGCgcaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 24739 0.7 0.506408
Target:  5'- --gCGAGUCUGGCGCacucGUUGGGCGGCc -3'
miRNA:   3'- gagGCUCGGGCCGCG----CAGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 484 0.69 0.560631
Target:  5'- cCUCCGGGCCgCGcGcCGCGUCcgcgggaAGGCGGgGu -3'
miRNA:   3'- -GAGGCUCGG-GC-C-GCGCAG-------UCUGCCgU- -5'
16068 3' -62.5 NC_004065.1 + 67745 0.68 0.637251
Target:  5'- -gCCGAGCggCGcCGCGUCcGACGGCGu -3'
miRNA:   3'- gaGGCUCGg-GCcGCGCAGuCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 57388 0.68 0.618229
Target:  5'- uCUCCgGAGCUcgCGGU-CGUCAcGGCGGCAu -3'
miRNA:   3'- -GAGG-CUCGG--GCCGcGCAGU-CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 128437 0.68 0.608728
Target:  5'- -aCCGAGUCUGaGCGCGgCGGA-GGCGu -3'
miRNA:   3'- gaGGCUCGGGC-CGCGCaGUCUgCCGU- -5'
16068 3' -62.5 NC_004065.1 + 182465 0.68 0.599243
Target:  5'- cCUCUGGGCCUGGguCGC-UgGGugGGCGg -3'
miRNA:   3'- -GAGGCUCGGGCC--GCGcAgUCugCCGU- -5'
16068 3' -62.5 NC_004065.1 + 109220 0.69 0.58034
Target:  5'- uUCCu-GCUCGGCGaCGggAGACGGCGg -3'
miRNA:   3'- gAGGcuCGGGCCGC-GCagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 227093 0.69 0.570934
Target:  5'- -gCCGAGCCCGGUGCcaggaaccuuGUacccacaGGAUGGCc -3'
miRNA:   3'- gaGGCUCGGGCCGCG----------CAg------UCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 168350 0.69 0.570934
Target:  5'- uCUCCGAuCCCGGUGguaaggacgaGUUAGACGGUu -3'
miRNA:   3'- -GAGGCUcGGGCCGCg---------CAGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 119249 0.71 0.461416
Target:  5'- gCUCCGAaacgGgCCGcGCGCcuuauauGUCAGGCGGCGc -3'
miRNA:   3'- -GAGGCU----CgGGC-CGCG-------CAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 161286 0.71 0.453694
Target:  5'- gUCCGAGUCCGGCagcgacccCGUCAGGauGCGg -3'
miRNA:   3'- gAGGCUCGGGCCGc-------GCAGUCUgcCGU- -5'
16068 3' -62.5 NC_004065.1 + 31567 0.71 0.453694
Target:  5'- uCUCCGA-CCCgaacgcggacgcGGCGaCGUCGGugGGCu -3'
miRNA:   3'- -GAGGCUcGGG------------CCGC-GCAGUCugCCGu -5'
16068 3' -62.5 NC_004065.1 + 191903 0.72 0.380627
Target:  5'- -gCCGaAGUCCGGCGCGaCGuACGGCAc -3'
miRNA:   3'- gaGGC-UCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 230013 0.72 0.373006
Target:  5'- -cCCGggGGCCCGcGCGCacUCAGACGGCc -3'
miRNA:   3'- gaGGC--UCGGGC-CGCGc-AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 105214 0.66 0.758098
Target:  5'- gUUCGuggacGCCCGGCGgaCGUCGGACGa-- -3'
miRNA:   3'- gAGGCu----CGGGCCGC--GCAGUCUGCcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.