Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 114908 | 0.68 | 0.637251 |
Target: 5'- uCUCgGuGGCuCCGGgGgGUgGGGCGGCAc -3' miRNA: 3'- -GAGgC-UCG-GGCCgCgCAgUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 146850 | 0.68 | 0.638202 |
Target: 5'- -gCCGGGagcgccuggucugcaUCGGCGCGUgaacgCGGGCGGCAg -3' miRNA: 3'- gaGGCUCg--------------GGCCGCGCA-----GUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 83211 | 0.68 | 0.64676 |
Target: 5'- aUUCGGGCCCGGgcaggcacaucCGCa--GGACGGCGa -3' miRNA: 3'- gAGGCUCGGGCC-----------GCGcagUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 229474 | 0.67 | 0.665742 |
Target: 5'- uCUCCGGGCCgGGCGCcgcucgucgCGGAagcuucacacgcUGGCGg -3' miRNA: 3'- -GAGGCUCGGgCCGCGca-------GUCU------------GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 132319 | 0.67 | 0.665742 |
Target: 5'- cCUCCuggacAGCCCGG-GCGgc-GGCGGCAg -3' miRNA: 3'- -GAGGc----UCGGGCCgCGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 616 | 0.67 | 0.675201 |
Target: 5'- --aCGcGCUCaGGCuCGUCAGGCGGCGg -3' miRNA: 3'- gagGCuCGGG-CCGcGCAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 80312 | 0.68 | 0.599243 |
Target: 5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3' miRNA: 3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 26437 | 0.69 | 0.574692 |
Target: 5'- gUCCGAGUCCGGacuGCGguacgCAuacacguugguggucGACGGCAc -3' miRNA: 3'- gAGGCUCGGGCCg--CGCa----GU---------------CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 203115 | 0.69 | 0.552239 |
Target: 5'- uUCgGGGUCCGGCGUgcgGUCGaGCGGCc -3' miRNA: 3'- gAGgCUCGGGCCGCG---CAGUcUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 230013 | 0.72 | 0.373006 |
Target: 5'- -cCCGggGGCCCGcGCGCacUCAGACGGCc -3' miRNA: 3'- gaGGC--UCGGGC-CGCGc-AGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 191903 | 0.72 | 0.380627 |
Target: 5'- -gCCGaAGUCCGGCGCGaCGuACGGCAc -3' miRNA: 3'- gaGGC-UCGGGCCGCGCaGUcUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 31567 | 0.71 | 0.453694 |
Target: 5'- uCUCCGA-CCCgaacgcggacgcGGCGaCGUCGGugGGCu -3' miRNA: 3'- -GAGGCUcGGG------------CCGC-GCAGUCugCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 161286 | 0.71 | 0.453694 |
Target: 5'- gUCCGAGUCCGGCagcgacccCGUCAGGauGCGg -3' miRNA: 3'- gAGGCUCGGGCCGc-------GCAGUCUgcCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 119249 | 0.71 | 0.461416 |
Target: 5'- gCUCCGAaacgGgCCGcGCGCcuuauauGUCAGGCGGCGc -3' miRNA: 3'- -GAGGCU----CgGGC-CGCG-------CAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 1 | 0.71 | 0.462278 |
Target: 5'- ----GGGCCCGcGCGCacUCAGACGGCc -3' miRNA: 3'- gaggCUCGGGC-CGCGc-AGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 209379 | 0.71 | 0.470947 |
Target: 5'- aCUCCGAGgCCuGCGaCGg-AGACGGCGa -3' miRNA: 3'- -GAGGCUCgGGcCGC-GCagUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 116715 | 0.7 | 0.488526 |
Target: 5'- -cCCGcGUCCGGCGCG-CGaGCGGCGu -3' miRNA: 3'- gaGGCuCGGGCCGCGCaGUcUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128138 | 0.69 | 0.532814 |
Target: 5'- gCUCgGAGgagccgcCCCGGCGuCGUCGucugcGGCGGCGa -3' miRNA: 3'- -GAGgCUC-------GGGCCGC-GCAGU-----CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 144053 | 0.69 | 0.533734 |
Target: 5'- gUUCGgcaagcaguuGGCCUuguGGCGCGUCgaGGACGGCGa -3' miRNA: 3'- gAGGC----------UCGGG---CCGCGCAG--UCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 196859 | 0.69 | 0.542961 |
Target: 5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3' miRNA: 3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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