Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 3' | -62.5 | NC_004065.1 | + | 132154 | 0.73 | 0.350773 |
Target: 5'- -gCCGAGCCUGGaCGUGgu-GGCGGCGa -3' miRNA: 3'- gaGGCUCGGGCC-GCGCaguCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 165330 | 0.68 | 0.626787 |
Target: 5'- aCUCCGAGCCgagcugcuggaucUGGUGgaUGUCGGugGuGCAg -3' miRNA: 3'- -GAGGCUCGG-------------GCCGC--GCAGUCugC-CGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 139651 | 0.68 | 0.627739 |
Target: 5'- gCUCCaAGCUgugCGGCGCGUgcGGCGGCc -3' miRNA: 3'- -GAGGcUCGG---GCCGCGCAguCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 105214 | 0.66 | 0.758098 |
Target: 5'- gUUCGuggacGCCCGGCGgaCGUCGGACGa-- -3' miRNA: 3'- gAGGCu----CGGGCCGC--GCAGUCUGCcgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 161286 | 0.71 | 0.453694 |
Target: 5'- gUCCGAGUCCGGCagcgacccCGUCAGGauGCGg -3' miRNA: 3'- gAGGCUCGGGCCGc-------GCAGUCUgcCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 119249 | 0.71 | 0.461416 |
Target: 5'- gCUCCGAaacgGgCCGcGCGCcuuauauGUCAGGCGGCGc -3' miRNA: 3'- -GAGGCU----CgGGC-CGCG-------CAGUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 209379 | 0.71 | 0.470947 |
Target: 5'- aCUCCGAGgCCuGCGaCGg-AGACGGCGa -3' miRNA: 3'- -GAGGCUCgGGcCGC-GCagUCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 116715 | 0.7 | 0.488526 |
Target: 5'- -cCCGcGUCCGGCGCG-CGaGCGGCGu -3' miRNA: 3'- gaGGCuCGGGCCGCGCaGUcUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 196859 | 0.69 | 0.542961 |
Target: 5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3' miRNA: 3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 97938 | 0.68 | 0.608728 |
Target: 5'- gUCCG-GCaCCGGCGUGgcagCGGugGGg- -3' miRNA: 3'- gAGGCuCG-GGCCGCGCa---GUCugCCgu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 26437 | 0.69 | 0.574692 |
Target: 5'- gUCCGAGUCCGGacuGCGguacgCAuacacguugguggucGACGGCAc -3' miRNA: 3'- gAGGCUCGGGCCg--CGCa----GU---------------CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 144053 | 0.69 | 0.533734 |
Target: 5'- gUUCGgcaagcaguuGGCCUuguGGCGCGUCgaGGACGGCGa -3' miRNA: 3'- gAGGC----------UCGGG---CCGCGCAG--UCUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 230013 | 0.72 | 0.373006 |
Target: 5'- -cCCGggGGCCCGcGCGCacUCAGACGGCc -3' miRNA: 3'- gaGGC--UCGGGC-CGCGc-AGUCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 80312 | 0.68 | 0.599243 |
Target: 5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3' miRNA: 3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 191903 | 0.72 | 0.380627 |
Target: 5'- -gCCGaAGUCCGGCGCGaCGuACGGCAc -3' miRNA: 3'- gaGGC-UCGGGCCGCGCaGUcUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 128138 | 0.69 | 0.532814 |
Target: 5'- gCUCgGAGgagccgcCCCGGCGuCGUCGucugcGGCGGCGa -3' miRNA: 3'- -GAGgCUC-------GGGCCGC-GCAGU-----CUGCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 197770 | 0.68 | 0.608728 |
Target: 5'- aCUCgGAGCCguccgaugauggCGGCGaGUCcGACGGCu -3' miRNA: 3'- -GAGgCUCGG------------GCCGCgCAGuCUGCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 121059 | 0.68 | 0.627739 |
Target: 5'- gUCgGAGCCUGGCGuCGUgcccCAGGucguCGGCGu -3' miRNA: 3'- gAGgCUCGGGCCGC-GCA----GUCU----GCCGU- -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 31567 | 0.71 | 0.453694 |
Target: 5'- uCUCCGA-CCCgaacgcggacgcGGCGaCGUCGGugGGCu -3' miRNA: 3'- -GAGGCUcGGG------------CCGC-GCAGUCugCCGu -5' |
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16068 | 3' | -62.5 | NC_004065.1 | + | 1 | 0.71 | 0.462278 |
Target: 5'- ----GGGCCCGcGCGCacUCAGACGGCc -3' miRNA: 3'- gaggCUCGGGC-CGCGc-AGUCUGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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