miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 3' -62.5 NC_004065.1 + 146850 0.68 0.638202
Target:  5'- -gCCGGGagcgccuggucugcaUCGGCGCGUgaacgCGGGCGGCAg -3'
miRNA:   3'- gaGGCUCg--------------GGCCGCGCA-----GUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 114908 0.68 0.637251
Target:  5'- uCUCgGuGGCuCCGGgGgGUgGGGCGGCAc -3'
miRNA:   3'- -GAGgC-UCG-GGCCgCgCAgUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 97938 0.68 0.608728
Target:  5'- gUCCG-GCaCCGGCGUGgcagCGGugGGg- -3'
miRNA:   3'- gAGGCuCG-GGCCGCGCa---GUCugCCgu -5'
16068 3' -62.5 NC_004065.1 + 144053 0.69 0.533734
Target:  5'- gUUCGgcaagcaguuGGCCUuguGGCGCGUCgaGGACGGCGa -3'
miRNA:   3'- gAGGC----------UCGGG---CCGCGCAG--UCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116305 0.66 0.712662
Target:  5'- uCUCCGAGgugUCGGCGuCGgc-GGCGGCAg -3'
miRNA:   3'- -GAGGCUCg--GGCCGC-GCaguCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 163895 0.67 0.68463
Target:  5'- gUCCGcGGCCCaGCGCGcCAGcgccuCGGUg -3'
miRNA:   3'- gAGGC-UCGGGcCGCGCaGUCu----GCCGu -5'
16068 3' -62.5 NC_004065.1 + 139651 0.68 0.627739
Target:  5'- gCUCCaAGCUgugCGGCGCGUgcGGCGGCc -3'
miRNA:   3'- -GAGGcUCGG---GCCGCGCAguCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 128138 0.69 0.532814
Target:  5'- gCUCgGAGgagccgcCCCGGCGuCGUCGucugcGGCGGCGa -3'
miRNA:   3'- -GAGgCUC-------GGGCCGC-GCAGU-----CUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 616 0.67 0.675201
Target:  5'- --aCGcGCUCaGGCuCGUCAGGCGGCGg -3'
miRNA:   3'- gagGCuCGGG-CCGcGCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 116715 0.7 0.488526
Target:  5'- -cCCGcGUCCGGCGCG-CGaGCGGCGu -3'
miRNA:   3'- gaGGCuCGGGCCGCGCaGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 151533 0.68 0.627739
Target:  5'- -gCCG-GCCgGGCgGUGUCGGGCGcGCu -3'
miRNA:   3'- gaGGCuCGGgCCG-CGCAGUCUGC-CGu -5'
16068 3' -62.5 NC_004065.1 + 83211 0.68 0.64676
Target:  5'- aUUCGGGCCCGGgcaggcacaucCGCa--GGACGGCGa -3'
miRNA:   3'- gAGGCUCGGGCC-----------GCGcagUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 121059 0.68 0.627739
Target:  5'- gUCgGAGCCUGGCGuCGUgcccCAGGucguCGGCGu -3'
miRNA:   3'- gAGgCUCGGGCCGC-GCA----GUCU----GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 165330 0.68 0.626787
Target:  5'- aCUCCGAGCCgagcugcuggaucUGGUGgaUGUCGGugGuGCAg -3'
miRNA:   3'- -GAGGCUCGG-------------GCCGC--GCAGUCugC-CGU- -5'
16068 3' -62.5 NC_004065.1 + 80312 0.68 0.599243
Target:  5'- gUCCGAgGgCCGGCGCGgccgCGGcccccCGGCGu -3'
miRNA:   3'- gAGGCU-CgGGCCGCGCa---GUCu----GCCGU- -5'
16068 3' -62.5 NC_004065.1 + 196859 0.69 0.542961
Target:  5'- cCUCC-AGUCCGcucgcGCGCGUCA-ACGGCAu -3'
miRNA:   3'- -GAGGcUCGGGC-----CGCGCAGUcUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 117788 0.66 0.740161
Target:  5'- -gCCGAGacaucaUCGGUcacccCGUCGGACGGCGg -3'
miRNA:   3'- gaGGCUCg-----GGCCGc----GCAGUCUGCCGU- -5'
16068 3' -62.5 NC_004065.1 + 8292 0.66 0.731066
Target:  5'- aUCgGGGCCgCGGUguuaGCGgucguguaccUCAGACGGCc -3'
miRNA:   3'- gAGgCUCGG-GCCG----CGC----------AGUCUGCCGu -5'
16068 3' -62.5 NC_004065.1 + 118629 0.67 0.703367
Target:  5'- aUCCG-GCCCGGuCGCG-CAuGACcuGGCu -3'
miRNA:   3'- gAGGCuCGGGCC-GCGCaGU-CUG--CCGu -5'
16068 3' -62.5 NC_004065.1 + 130578 0.67 0.68463
Target:  5'- aUCgCGGGCgaGGCGCGcgaugUCgAGGCGGCGu -3'
miRNA:   3'- gAG-GCUCGggCCGCGC-----AG-UCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.