miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 152242 0.65 0.996284
Target:  5'- aCGUugucGCGGUacgaGCACGCcAUCAGcucgcacagcaggcACACCg -3'
miRNA:   3'- -GCA----UGCCAg---CGUGCGcUGGUU--------------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 88462 0.66 0.99587
Target:  5'- gCGUcGCaGGUCuuGCGCGCGACgccgaaGAGCGCg -3'
miRNA:   3'- -GCA-UG-CCAG--CGUGCGCUGg-----UUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 149564 0.66 0.99587
Target:  5'- cCGUugGaGcccUCGC-CGCGAacguuaCGAACGCCc -3'
miRNA:   3'- -GCAugC-C---AGCGuGCGCUg-----GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 118031 0.66 0.99587
Target:  5'- -uUGuuGUCGUAgGCGGCCcccucGAGCGCCu -3'
miRNA:   3'- gcAUgcCAGCGUgCGCUGG-----UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 75231 0.66 0.99587
Target:  5'- uGUAUaGUC-UACGCGACCGcauucGCGCCc -3'
miRNA:   3'- gCAUGcCAGcGUGCGCUGGUu----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 135387 0.66 0.99587
Target:  5'- --gACGGUgaCGCGC-CGGCC--GCGCCc -3'
miRNA:   3'- gcaUGCCA--GCGUGcGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 29781 0.66 0.99587
Target:  5'- aCGUACGGgggCGCuccgGCG-GGCCGuuacACGCUg -3'
miRNA:   3'- -GCAUGCCa--GCG----UGCgCUGGUu---UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 9431 0.66 0.99587
Target:  5'- -aUACGGUggagaucagCgGCACGUGGCgAAACACg -3'
miRNA:   3'- gcAUGCCA---------G-CGUGCGCUGgUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 222618 0.66 0.99587
Target:  5'- aCGUACcGUCGCACcuGCGGCgGucGGC-CCu -3'
miRNA:   3'- -GCAUGcCAGCGUG--CGCUGgU--UUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 104103 0.66 0.99587
Target:  5'- ---cCGGUCggccuGCACGUG-CCGAGCgGCCg -3'
miRNA:   3'- gcauGCCAG-----CGUGCGCuGGUUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 113228 0.66 0.99587
Target:  5'- gGUAcCGGccaacaCGUACGUGGCCGcGCaACCg -3'
miRNA:   3'- gCAU-GCCa-----GCGUGCGCUGGUuUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 5215 0.66 0.99587
Target:  5'- aCGgacagACGG-CGguCGUGACCGuGCuGCCg -3'
miRNA:   3'- -GCa----UGCCaGCguGCGCUGGUuUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 34990 0.66 0.995808
Target:  5'- cCGUGCgcccuGGUCauggacgaGCGCGGCCGcuucuuccuguacGACGCCg -3'
miRNA:   3'- -GCAUG-----CCAGcg------UGCGCUGGU-------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 100140 0.66 0.995808
Target:  5'- --cAgGGUCcgccgcaGCGCGCGGCacagguCGAACACCu -3'
miRNA:   3'- gcaUgCCAG-------CGUGCGCUG------GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 12634 0.66 0.995215
Target:  5'- aCGUcGCGGuUCGaCACgGCGAaCC--GCACCa -3'
miRNA:   3'- -GCA-UGCC-AGC-GUG-CGCU-GGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 53856 0.66 0.995215
Target:  5'- uCGcgGCGGUCGCGC-CGG--GAugGCCa -3'
miRNA:   3'- -GCa-UGCCAGCGUGcGCUggUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 183854 0.66 0.995215
Target:  5'- --cGCcGUCGCGuguuuggcCGUGGCCGAACGCa -3'
miRNA:   3'- gcaUGcCAGCGU--------GCGCUGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 198638 0.66 0.995215
Target:  5'- ----aGGUUGCGCGCcACCAggUGCa -3'
miRNA:   3'- gcaugCCAGCGUGCGcUGGUuuGUGg -5'
16068 5' -52.9 NC_004065.1 + 80130 0.66 0.995215
Target:  5'- gGUGCaGGUCGUcccugGCGCGGCagAGGCGgCu -3'
miRNA:   3'- gCAUG-CCAGCG-----UGCGCUGg-UUUGUgG- -5'
16068 5' -52.9 NC_004065.1 + 122505 0.66 0.995215
Target:  5'- --gGCGGUCGC-CGCG-C---GCACCu -3'
miRNA:   3'- gcaUGCCAGCGuGCGCuGguuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.