miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 152242 0.65 0.996284
Target:  5'- aCGUugucGCGGUacgaGCACGCcAUCAGcucgcacagcaggcACACCg -3'
miRNA:   3'- -GCA----UGCCAg---CGUGCGcUGGUU--------------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 122505 0.66 0.995215
Target:  5'- --gGCGGUCGC-CGCG-C---GCACCu -3'
miRNA:   3'- gcaUGCCAGCGuGCGCuGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 12634 0.66 0.995215
Target:  5'- aCGUcGCGGuUCGaCACgGCGAaCC--GCACCa -3'
miRNA:   3'- -GCA-UGCC-AGC-GUG-CGCU-GGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 131878 0.66 0.99273
Target:  5'- -uUGauGUUGCACGCGAUgc-GCACCg -3'
miRNA:   3'- gcAUgcCAGCGUGCGCUGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 197156 0.66 0.994478
Target:  5'- ---cCGG-CGCGCcucuCGACCAggGACGCCa -3'
miRNA:   3'- gcauGCCaGCGUGc---GCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 19762 0.66 0.994478
Target:  5'- gCGUGCGGgggUGUggGCGACgGA--GCCg -3'
miRNA:   3'- -GCAUGCCa--GCGugCGCUGgUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 23679 0.66 0.99273
Target:  5'- --cACGGUuccccgucCGUACcgaGGCCAGACACCc -3'
miRNA:   3'- gcaUGCCA--------GCGUGcg-CUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 53856 0.66 0.995215
Target:  5'- uCGcgGCGGUCGCGC-CGG--GAugGCCa -3'
miRNA:   3'- -GCa-UGCCAGCGUGcGCUggUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 95786 0.66 0.993652
Target:  5'- uCGUACGGUccccgugcaCGUugGUGACagguCGAAC-CCg -3'
miRNA:   3'- -GCAUGCCA---------GCGugCGCUG----GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 91842 0.66 0.993652
Target:  5'- uCGUucUGGUCGCcCGCGgcACCAGA-ACCu -3'
miRNA:   3'- -GCAu-GCCAGCGuGCGC--UGGUUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 136941 0.66 0.995215
Target:  5'- uCGUGCGG-CGCuACGaCGGCaggaaaGGACuGCCg -3'
miRNA:   3'- -GCAUGCCaGCG-UGC-GCUGg-----UUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 79983 0.66 0.993564
Target:  5'- --cACGGUCGCcgacCGCGGgcaguuccuccuuCCGAGcCGCCa -3'
miRNA:   3'- gcaUGCCAGCGu---GCGCU-------------GGUUU-GUGG- -5'
16068 5' -52.9 NC_004065.1 + 198638 0.66 0.995215
Target:  5'- ----aGGUUGCGCGCcACCAggUGCa -3'
miRNA:   3'- gcaugCCAGCGUGCGcUGGUuuGUGg -5'
16068 5' -52.9 NC_004065.1 + 100140 0.66 0.995808
Target:  5'- --cAgGGUCcgccgcaGCGCGCGGCacagguCGAACACCu -3'
miRNA:   3'- gcaUgCCAG-------CGUGCGCUG------GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 67015 0.66 0.994478
Target:  5'- uGUACGGgcccCGCGCGgGcaGCCAGuGCAUg -3'
miRNA:   3'- gCAUGCCa---GCGUGCgC--UGGUU-UGUGg -5'
16068 5' -52.9 NC_004065.1 + 216880 0.66 0.99273
Target:  5'- --gACGGUCGUuCGCGGC--GGCGCg -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGguUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 135387 0.66 0.99587
Target:  5'- --gACGGUgaCGCGC-CGGCC--GCGCCc -3'
miRNA:   3'- gcaUGCCA--GCGUGcGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 154893 0.66 0.99273
Target:  5'- --cGgGGUCGacgauCGCGCGAUCGAAgcCGCCg -3'
miRNA:   3'- gcaUgCCAGC-----GUGCGCUGGUUU--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 208344 0.66 0.995215
Target:  5'- --cGCGGUCGCGuaucugacCGCGACCGucUAUUc -3'
miRNA:   3'- gcaUGCCAGCGU--------GCGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 80130 0.66 0.995215
Target:  5'- gGUGCaGGUCGUcccugGCGCGGCagAGGCGgCu -3'
miRNA:   3'- gCAUG-CCAGCG-----UGCGCUGg-UUUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.