miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 89877 0.66 0.99273
Target:  5'- uGUcgACGG-CGCcauCGuCGGCCccGAACACCa -3'
miRNA:   3'- gCA--UGCCaGCGu--GC-GCUGG--UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 216880 0.66 0.99273
Target:  5'- --gACGGUCGUuCGCGGC--GGCGCg -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGguUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 192287 0.66 0.993386
Target:  5'- cCGUcucuCGGUgcgauccagcuucaCGCGCGUGuCCGGGCACg -3'
miRNA:   3'- -GCAu---GCCA--------------GCGUGCGCuGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 12634 0.66 0.995215
Target:  5'- aCGUcGCGGuUCGaCACgGCGAaCC--GCACCa -3'
miRNA:   3'- -GCA-UGCC-AGC-GUG-CGCU-GGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 198310 0.66 0.99424
Target:  5'- uGUGCGGggagcucaccgucaUCgGCACGC--UCGGGCACCg -3'
miRNA:   3'- gCAUGCC--------------AG-CGUGCGcuGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 23216 0.66 0.99273
Target:  5'- cCGUGCaGG-CGCACG-GACUcuGGACGCg -3'
miRNA:   3'- -GCAUG-CCaGCGUGCgCUGG--UUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 135387 0.66 0.99587
Target:  5'- --gACGGUgaCGCGC-CGGCC--GCGCCc -3'
miRNA:   3'- gcaUGCCA--GCGUGcGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 110809 0.66 0.994478
Target:  5'- aCGcUGCGGUaCGCGaa-GGCCAAcggcACGCCu -3'
miRNA:   3'- -GC-AUGCCA-GCGUgcgCUGGUU----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 122505 0.66 0.995215
Target:  5'- --gGCGGUCGC-CGCG-C---GCACCu -3'
miRNA:   3'- gcaUGCCAGCGuGCGCuGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 63874 0.66 0.993652
Target:  5'- aCGU-CGG-CGC-CGCuGCCGccGGCGCCg -3'
miRNA:   3'- -GCAuGCCaGCGuGCGcUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 219056 0.66 0.99273
Target:  5'- cCG-AUGG-CGCuauuauuuACGC-ACCAGACACCg -3'
miRNA:   3'- -GCaUGCCaGCG--------UGCGcUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 136941 0.66 0.995215
Target:  5'- uCGUGCGG-CGCuACGaCGGCaggaaaGGACuGCCg -3'
miRNA:   3'- -GCAUGCCaGCG-UGC-GCUGg-----UUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 154893 0.66 0.99273
Target:  5'- --cGgGGUCGacgauCGCGCGAUCGAAgcCGCCg -3'
miRNA:   3'- gcaUgCCAGC-----GUGCGCUGGUUU--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 79983 0.66 0.993564
Target:  5'- --cACGGUCGCcgacCGCGGgcaguuccuccuuCCGAGcCGCCa -3'
miRNA:   3'- gcaUGCCAGCGu---GCGCU-------------GGUUU-GUGG- -5'
16068 5' -52.9 NC_004065.1 + 23679 0.66 0.99273
Target:  5'- --cACGGUuccccgucCGUACcgaGGCCAGACACCc -3'
miRNA:   3'- gcaUGCCA--------GCGUGcg-CUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 181225 0.66 0.994478
Target:  5'- uCGgcCGGcugCGUggACGgGACCuGGACACCa -3'
miRNA:   3'- -GCauGCCa--GCG--UGCgCUGG-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 27333 0.66 0.993652
Target:  5'- aCGcGCGGaacCGcCAUGCGACCuaccGAugACCa -3'
miRNA:   3'- -GCaUGCCa--GC-GUGCGCUGG----UUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 160607 0.66 0.99273
Target:  5'- --aGCaGGUCgGCGCGC-ACCuGGCGCCc -3'
miRNA:   3'- gcaUG-CCAG-CGUGCGcUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 573 0.66 0.994478
Target:  5'- --aACGGg-GCugGCGGCa--GCGCCa -3'
miRNA:   3'- gcaUGCCagCGugCGCUGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 111657 0.66 0.9944
Target:  5'- uGUAU--UCGCAgGUGAaaucgauCCAGACGCCg -3'
miRNA:   3'- gCAUGccAGCGUgCGCU-------GGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.