miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 53856 0.66 0.995215
Target:  5'- uCGcgGCGGUCGCGC-CGG--GAugGCCa -3'
miRNA:   3'- -GCa-UGCCAGCGUGcGCUggUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 136941 0.66 0.995215
Target:  5'- uCGUGCGG-CGCuACGaCGGCaggaaaGGACuGCCg -3'
miRNA:   3'- -GCAUGCCaGCG-UGC-GCUGg-----UUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 34990 0.66 0.995808
Target:  5'- cCGUGCgcccuGGUCauggacgaGCGCGGCCGcuucuuccuguacGACGCCg -3'
miRNA:   3'- -GCAUG-----CCAGcg------UGCGCUGGU-------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 199554 0.66 0.993652
Target:  5'- ---cCGGgCGCGCcccaucgugccGCGGuCCAGACGCCg -3'
miRNA:   3'- gcauGCCaGCGUG-----------CGCU-GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 80130 0.66 0.995215
Target:  5'- gGUGCaGGUCGUcccugGCGCGGCagAGGCGgCu -3'
miRNA:   3'- gCAUG-CCAGCG-----UGCGCUGg-UUUGUgG- -5'
16068 5' -52.9 NC_004065.1 + 29781 0.66 0.99587
Target:  5'- aCGUACGGgggCGCuccgGCG-GGCCGuuacACGCUg -3'
miRNA:   3'- -GCAUGCCa--GCG----UGCgCUGGUu---UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 5215 0.66 0.99587
Target:  5'- aCGgacagACGG-CGguCGUGACCGuGCuGCCg -3'
miRNA:   3'- -GCa----UGCCaGCguGCGCUGGUuUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 138761 0.66 0.99273
Target:  5'- gGUGCaGGUCG-GCGCGGUCGAugGCg -3'
miRNA:   3'- gCAUG-CCAGCgUGCGCUGGUUugUGg -5'
16068 5' -52.9 NC_004065.1 + 53230 0.66 0.994478
Target:  5'- gGUcUGG-CGCACGCG-CCu--CGCCu -3'
miRNA:   3'- gCAuGCCaGCGUGCGCuGGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 149564 0.66 0.99587
Target:  5'- cCGUugGaGcccUCGC-CGCGAacguuaCGAACGCCc -3'
miRNA:   3'- -GCAugC-C---AGCGuGCGCUg-----GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 9431 0.66 0.99587
Target:  5'- -aUACGGUggagaucagCgGCACGUGGCgAAACACg -3'
miRNA:   3'- gcAUGCCA---------G-CGUGCGCUGgUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 197156 0.66 0.994478
Target:  5'- ---cCGG-CGCGCcucuCGACCAggGACGCCa -3'
miRNA:   3'- gcauGCCaGCGUGc---GCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 198638 0.66 0.995215
Target:  5'- ----aGGUUGCGCGCcACCAggUGCa -3'
miRNA:   3'- gcaugCCAGCGUGCGcUGGUuuGUGg -5'
16068 5' -52.9 NC_004065.1 + 135387 0.66 0.99587
Target:  5'- --gACGGUgaCGCGC-CGGCC--GCGCCc -3'
miRNA:   3'- gcaUGCCA--GCGUGcGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 110809 0.66 0.994478
Target:  5'- aCGcUGCGGUaCGCGaa-GGCCAAcggcACGCCu -3'
miRNA:   3'- -GC-AUGCCA-GCGUgcgCUGGUU----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 208344 0.66 0.995215
Target:  5'- --cGCGGUCGCGuaucugacCGCGACCGucUAUUc -3'
miRNA:   3'- gcaUGCCAGCGU--------GCGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 95786 0.66 0.993652
Target:  5'- uCGUACGGUccccgugcaCGUugGUGACagguCGAAC-CCg -3'
miRNA:   3'- -GCAUGCCA---------GCGugCGCUG----GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 67558 0.67 0.990566
Target:  5'- uGgcCGGcCGCGCGaGGCCuu-CGCCg -3'
miRNA:   3'- gCauGCCaGCGUGCgCUGGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 68145 0.67 0.990566
Target:  5'- gCGU-CGGUCagGC-CGcCGAUgGAGCACCu -3'
miRNA:   3'- -GCAuGCCAG--CGuGC-GCUGgUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 22218 0.67 0.989309
Target:  5'- cCG-ACGGUCGCGa-UGACCGucaucgugccGGCGCCc -3'
miRNA:   3'- -GCaUGCCAGCGUgcGCUGGU----------UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.