miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 92139 1.14 0.005344
Target:  5'- aCGUACGGUCGCACGCGACCAAACACCg -3'
miRNA:   3'- -GCAUGCCAGCGUGCGCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 213485 0.87 0.230017
Target:  5'- --aGCGGUCGC-CGCGACCGucGACGCCa -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 111704 0.79 0.539473
Target:  5'- aCGUcgGCGGUccCGCugGCGACgaGAACGCCg -3'
miRNA:   3'- -GCA--UGCCA--GCGugCGCUGg-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 108965 0.79 0.578717
Target:  5'- uGUACGuGUCGUuCGCGACCAAguACGCg -3'
miRNA:   3'- gCAUGC-CAGCGuGCGCUGGUU--UGUGg -5'
16068 5' -52.9 NC_004065.1 + 32229 0.78 0.588634
Target:  5'- --cGCGGgCGCugGUGACCAacgcgGACACCg -3'
miRNA:   3'- gcaUGCCaGCGugCGCUGGU-----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 142837 0.78 0.588634
Target:  5'- -cUGCGGUCGCGCGaCGACC--GCGCg -3'
miRNA:   3'- gcAUGCCAGCGUGC-GCUGGuuUGUGg -5'
16068 5' -52.9 NC_004065.1 + 16542 0.77 0.668477
Target:  5'- gCGUcgACGGUCGCG-GCGACCGcuccgacuACACCu -3'
miRNA:   3'- -GCA--UGCCAGCGUgCGCUGGUu-------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 87188 0.76 0.707964
Target:  5'- cCGcGCGGUCGuCGCGCGACCgcAggUACUu -3'
miRNA:   3'- -GCaUGCCAGC-GUGCGCUGG--UuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 207960 0.76 0.707964
Target:  5'- gGUugGGcCGC-CGCGACCGaccggaggGAUACCg -3'
miRNA:   3'- gCAugCCaGCGuGCGCUGGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 43085 0.76 0.717704
Target:  5'- aCGUucggACGGUCcggGCAucCGCGACCcGGCGCCg -3'
miRNA:   3'- -GCA----UGCCAG---CGU--GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 68166 0.76 0.717704
Target:  5'- uCGcgGCGG-CGCGCGCGACgGAGCugUc -3'
miRNA:   3'- -GCa-UGCCaGCGUGCGCUGgUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 68805 0.76 0.727374
Target:  5'- aCGUGCGGgCGCuGCGCGAggUCGAGCugCu -3'
miRNA:   3'- -GCAUGCCaGCG-UGCGCU--GGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 214116 0.76 0.727374
Target:  5'- gCGgcCGGUCGCACGCG-CCGacaauaaaagGACGCg -3'
miRNA:   3'- -GCauGCCAGCGUGCGCuGGU----------UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 203126 0.75 0.736965
Target:  5'- gCGUGCGGUCGa--GCGGCCucuGgACCg -3'
miRNA:   3'- -GCAUGCCAGCgugCGCUGGuu-UgUGG- -5'
16068 5' -52.9 NC_004065.1 + 170305 0.75 0.736965
Target:  5'- cCGcgACGGUCGCcgugcgcCGCGGCCGcucGGCGCCc -3'
miRNA:   3'- -GCa-UGCCAGCGu------GCGCUGGU---UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 229364 0.75 0.746469
Target:  5'- gCGaGCGGgugcUCGCuacGCGCGGCCGGACGCa -3'
miRNA:   3'- -GCaUGCC----AGCG---UGCGCUGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 107445 0.75 0.755877
Target:  5'- uCGUGCccauGG-CGCugGCGACCGAGaucaACCa -3'
miRNA:   3'- -GCAUG----CCaGCGugCGCUGGUUUg---UGG- -5'
16068 5' -52.9 NC_004065.1 + 168928 0.75 0.755877
Target:  5'- cCGUcACGG-CGUACGCGACgCAGagcagcGCGCCg -3'
miRNA:   3'- -GCA-UGCCaGCGUGCGCUG-GUU------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 125847 0.75 0.780735
Target:  5'- --gACGGUCGUAUccggcaccgaagcgGCGACC-GACACCg -3'
miRNA:   3'- gcaUGCCAGCGUG--------------CGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 532 0.75 0.783442
Target:  5'- --cGCGGUgGCGCGCccccuGugCGAGCGCCc -3'
miRNA:   3'- gcaUGCCAgCGUGCG-----CugGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.