miRNA display CGI


Results 21 - 40 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 56635 0.74 0.792382
Target:  5'- -aUGCGGUgGCA-GCGGCCGcGGCACCc -3'
miRNA:   3'- gcAUGCCAgCGUgCGCUGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 6495 0.74 0.809841
Target:  5'- cCGcACGGUCGgGuCGCGGCC-GGCACUa -3'
miRNA:   3'- -GCaUGCCAGCgU-GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 103401 0.74 0.81326
Target:  5'- gCGUGCGGUgaaaaacacggccgaCGCgauggaGCGCGGCCugaucGACACCu -3'
miRNA:   3'- -GCAUGCCA---------------GCG------UGCGCUGGu----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 204509 0.74 0.815809
Target:  5'- uCGUGCGcG-CGCACgGCGagaccgucguggucGCCAGACGCCu -3'
miRNA:   3'- -GCAUGC-CaGCGUG-CGC--------------UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 123532 0.74 0.818343
Target:  5'- gGUGUGGUCGUACaggGUGGCC-AGCGCCg -3'
miRNA:   3'- gCAUGCCAGCGUG---CGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 94633 0.74 0.818343
Target:  5'- --cGgGGUCGgGCGCGGCCGGcgcguCACCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGUUu----GUGG- -5'
16068 5' -52.9 NC_004065.1 + 61382 0.73 0.834855
Target:  5'- aCG-ACGGUCGC-CGCG-CCGgcuccgcccgcGGCACCa -3'
miRNA:   3'- -GCaUGCCAGCGuGCGCuGGU-----------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 199514 0.73 0.850664
Target:  5'- aCGcgGCGGcCGCcacguGCGCGcaGCCGGGCGCCu -3'
miRNA:   3'- -GCa-UGCCaGCG-----UGCGC--UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 191575 0.73 0.850664
Target:  5'- gCGUGCGGUgaucgGCGCGCGAaaaCCGucgucguaGACGCCu -3'
miRNA:   3'- -GCAUGCCAg----CGUGCGCU---GGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 26041 0.73 0.858288
Target:  5'- --aGCGGcUCGCACGCGGCguCGAACcgcgaGCCg -3'
miRNA:   3'- gcaUGCC-AGCGUGCGCUG--GUUUG-----UGG- -5'
16068 5' -52.9 NC_004065.1 + 60982 0.73 0.858288
Target:  5'- gCGUACGGcCGCA-GCG-CCuuGCACUg -3'
miRNA:   3'- -GCAUGCCaGCGUgCGCuGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 63508 0.73 0.865716
Target:  5'- gGUGCGGauggccUCGCccuCGCGGCCGuagauCGCCg -3'
miRNA:   3'- gCAUGCC------AGCGu--GCGCUGGUuu---GUGG- -5'
16068 5' -52.9 NC_004065.1 + 201544 0.73 0.865716
Target:  5'- --cGCGG-CGC-UGuCGGCCAGACGCCa -3'
miRNA:   3'- gcaUGCCaGCGuGC-GCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 45841 0.72 0.872944
Target:  5'- uCGgacCGGcCGCACGgGACgCGAugGCCg -3'
miRNA:   3'- -GCau-GCCaGCGUGCgCUG-GUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 195071 0.72 0.872944
Target:  5'- aGUGCaGGUCgggcgaGCGCGCGGCgCAGACcCCc -3'
miRNA:   3'- gCAUG-CCAG------CGUGCGCUG-GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 104878 0.72 0.872944
Target:  5'- gGUGCGGcugaUCGcCACGCGGCUggGCGa- -3'
miRNA:   3'- gCAUGCC----AGC-GUGCGCUGGuuUGUgg -5'
16068 5' -52.9 NC_004065.1 + 120430 0.72 0.879966
Target:  5'- --gGgGGUCGaGCGCGGCCugauACGCCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGuu--UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 64456 0.72 0.879966
Target:  5'- --aACuGUCGCGcCGUGGCCGAGCugCu -3'
miRNA:   3'- gcaUGcCAGCGU-GCGCUGGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 107549 0.72 0.886778
Target:  5'- -cUGCgGGUCGUGCGCuACCgGGACGCCa -3'
miRNA:   3'- gcAUG-CCAGCGUGCGcUGG-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 137886 0.72 0.891418
Target:  5'- uGUuuGGUCGCGUGCGACCGuacgucuuuccgucAAUGCCg -3'
miRNA:   3'- gCAugCCAGCGUGCGCUGGU--------------UUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.