miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 78710 0.72 0.893375
Target:  5'- -cUGCGGUUGaGCGCGgaACUGAGCGCCu -3'
miRNA:   3'- gcAUGCCAGCgUGCGC--UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 91199 0.72 0.893375
Target:  5'- cCGU-CGG-CGUGCGCGGCaucGGCGCCg -3'
miRNA:   3'- -GCAuGCCaGCGUGCGCUGgu-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 186961 0.72 0.893375
Target:  5'- aCGUGCGGUCuGU-CGCG-CC-GACGCCu -3'
miRNA:   3'- -GCAUGCCAG-CGuGCGCuGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 114030 0.72 0.893375
Target:  5'- --cGCGG-CGCACGuCGGCggaCGAGCGCCu -3'
miRNA:   3'- gcaUGCCaGCGUGC-GCUG---GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 201483 0.72 0.893375
Target:  5'- uCGUGCGGcgcaGCAUGCGG-CGGGCGCUa -3'
miRNA:   3'- -GCAUGCCag--CGUGCGCUgGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 202182 0.71 0.911843
Target:  5'- --cGCGGUgaUGUucAgGCGGCCGAGCACCc -3'
miRNA:   3'- gcaUGCCA--GCG--UgCGCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 138006 0.71 0.916989
Target:  5'- uGUACGGucugauaUCGCuuGCGACagaAGAUACCc -3'
miRNA:   3'- gCAUGCC-------AGCGugCGCUGg--UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 22068 0.71 0.91755
Target:  5'- gGU-CGGUCGCG-GCGGCCcAAC-CCg -3'
miRNA:   3'- gCAuGCCAGCGUgCGCUGGuUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 35721 0.71 0.91755
Target:  5'- ---cUGGUacCGCugGCGACUcgGCGCCa -3'
miRNA:   3'- gcauGCCA--GCGugCGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 67362 0.71 0.923029
Target:  5'- aCGcGCGGUCGagcucuagaCACGCcuaGGCUggGCGCCg -3'
miRNA:   3'- -GCaUGCCAGC---------GUGCG---CUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 59926 0.71 0.923029
Target:  5'- --gACGuuGUCGCgGCGCGGCCAGAaGCCc -3'
miRNA:   3'- gcaUGC--CAGCG-UGCGCUGGUUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 42036 0.71 0.923029
Target:  5'- gCGaGCcauGUUGCGCGCGGCCGcagcuGCACCc -3'
miRNA:   3'- -GCaUGc--CAGCGUGCGCUGGUu----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 98140 0.71 0.923029
Target:  5'- gCGgcgGCGGUgCGCAuCGCGugCA-ACAUCa -3'
miRNA:   3'- -GCa--UGCCA-GCGU-GCGCugGUuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 208725 0.71 0.92828
Target:  5'- --gGCGGUCguGCACGgauguucggaauCGACCAuGACGCCg -3'
miRNA:   3'- gcaUGCCAG--CGUGC------------GCUGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 29128 0.71 0.92828
Target:  5'- aGgcCGGUCGCccaGCGCGACgGGcaGCCg -3'
miRNA:   3'- gCauGCCAGCG---UGCGCUGgUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 85520 0.71 0.92828
Target:  5'- ---cCGGUCGC-CGCGcCCGAAguCGCCg -3'
miRNA:   3'- gcauGCCAGCGuGCGCuGGUUU--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 132795 0.71 0.92828
Target:  5'- cCGUGCGc-CGgACGCGACCccGAACAUCc -3'
miRNA:   3'- -GCAUGCcaGCgUGCGCUGG--UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 183298 0.71 0.92828
Target:  5'- gCGUGCGccUCGUGCGCGACCu--CGCg -3'
miRNA:   3'- -GCAUGCc-AGCGUGCGCUGGuuuGUGg -5'
16068 5' -52.9 NC_004065.1 + 91707 0.71 0.933304
Target:  5'- gGUGaggaGGccUCGCACGCGAUCAGG-GCCg -3'
miRNA:   3'- gCAUg---CC--AGCGUGCGCUGGUUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 112628 0.71 0.933304
Target:  5'- --cGCGaGcccagCGCGCGCGGCCGAGCGUCg -3'
miRNA:   3'- gcaUGC-Ca----GCGUGCGCUGGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.