miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 179691 0.66 0.995215
Target:  5'- uCGcgGCGGUgGcCACGCGugC---CACCa -3'
miRNA:   3'- -GCa-UGCCAgC-GUGCGCugGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 208344 0.66 0.995215
Target:  5'- --cGCGGUCGCGuaucugacCGCGACCGucUAUUc -3'
miRNA:   3'- gcaUGCCAGCGU--------GCGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 12634 0.66 0.995215
Target:  5'- aCGUcGCGGuUCGaCACgGCGAaCC--GCACCa -3'
miRNA:   3'- -GCA-UGCC-AGC-GUG-CGCU-GGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 152827 0.66 0.995215
Target:  5'- cCGUGCGGggcgcCGC-CGCGcACUuguGGCACa -3'
miRNA:   3'- -GCAUGCCa----GCGuGCGC-UGGu--UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 136941 0.66 0.995215
Target:  5'- uCGUGCGG-CGCuACGaCGGCaggaaaGGACuGCCg -3'
miRNA:   3'- -GCAUGCCaGCG-UGC-GCUGg-----UUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 197156 0.66 0.994478
Target:  5'- ---cCGG-CGCGCcucuCGACCAggGACGCCa -3'
miRNA:   3'- gcauGCCaGCGUGc---GCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 67015 0.66 0.994478
Target:  5'- uGUACGGgcccCGCGCGgGcaGCCAGuGCAUg -3'
miRNA:   3'- gCAUGCCa---GCGUGCgC--UGGUU-UGUGg -5'
16068 5' -52.9 NC_004065.1 + 19762 0.66 0.994478
Target:  5'- gCGUGCGGgggUGUggGCGACgGA--GCCg -3'
miRNA:   3'- -GCAUGCCa--GCGugCGCUGgUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 181225 0.66 0.994478
Target:  5'- uCGgcCGGcugCGUggACGgGACCuGGACACCa -3'
miRNA:   3'- -GCauGCCa--GCG--UGCgCUGG-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 53230 0.66 0.994478
Target:  5'- gGUcUGG-CGCACGCG-CCu--CGCCu -3'
miRNA:   3'- gCAuGCCaGCGUGCGCuGGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 175563 0.66 0.994478
Target:  5'- gCGUGCGcUCGCG-GCaGACCGcGCGCg -3'
miRNA:   3'- -GCAUGCcAGCGUgCG-CUGGUuUGUGg -5'
16068 5' -52.9 NC_004065.1 + 573 0.66 0.994478
Target:  5'- --aACGGg-GCugGCGGCa--GCGCCa -3'
miRNA:   3'- gcaUGCCagCGugCGCUGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 110809 0.66 0.994478
Target:  5'- aCGcUGCGGUaCGCGaa-GGCCAAcggcACGCCu -3'
miRNA:   3'- -GC-AUGCCA-GCGUgcgCUGGUU----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 111657 0.66 0.9944
Target:  5'- uGUAU--UCGCAgGUGAaaucgauCCAGACGCCg -3'
miRNA:   3'- gCAUGccAGCGUgCGCU-------GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 198310 0.66 0.99424
Target:  5'- uGUGCGGggagcucaccgucaUCgGCACGC--UCGGGCACCg -3'
miRNA:   3'- gCAUGCC--------------AG-CGUGCGcuGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 95786 0.66 0.993652
Target:  5'- uCGUACGGUccccgugcaCGUugGUGACagguCGAAC-CCg -3'
miRNA:   3'- -GCAUGCCA---------GCGugCGCUG----GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 91842 0.66 0.993652
Target:  5'- uCGUucUGGUCGCcCGCGgcACCAGA-ACCu -3'
miRNA:   3'- -GCAu-GCCAGCGuGCGC--UGGUUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 27333 0.66 0.993652
Target:  5'- aCGcGCGGaacCGcCAUGCGACCuaccGAugACCa -3'
miRNA:   3'- -GCaUGCCa--GC-GUGCGCUGG----UUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 63874 0.66 0.993652
Target:  5'- aCGU-CGG-CGC-CGCuGCCGccGGCGCCg -3'
miRNA:   3'- -GCAuGCCaGCGuGCGcUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 19795 0.66 0.993652
Target:  5'- uCGUccGCGGUCGUcuCGUGGCaCAgggGACACg -3'
miRNA:   3'- -GCA--UGCCAGCGu-GCGCUG-GU---UUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.