miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 199554 0.66 0.993652
Target:  5'- ---cCGGgCGCGCcccaucgugccGCGGuCCAGACGCCg -3'
miRNA:   3'- gcauGCCaGCGUG-----------CGCU-GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 79983 0.66 0.993564
Target:  5'- --cACGGUCGCcgacCGCGGgcaguuccuccuuCCGAGcCGCCa -3'
miRNA:   3'- gcaUGCCAGCGu---GCGCU-------------GGUUU-GUGG- -5'
16068 5' -52.9 NC_004065.1 + 123030 0.66 0.993564
Target:  5'- aCGUACucgucagGGaUGCACGCGGCgAgcAugGCCg -3'
miRNA:   3'- -GCAUG-------CCaGCGUGCGCUGgU--UugUGG- -5'
16068 5' -52.9 NC_004065.1 + 192287 0.66 0.993386
Target:  5'- cCGUcucuCGGUgcgauccagcuucaCGCGCGUGuCCGGGCACg -3'
miRNA:   3'- -GCAu---GCCA--------------GCGUGCGCuGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 23679 0.66 0.99273
Target:  5'- --cACGGUuccccgucCGUACcgaGGCCAGACACCc -3'
miRNA:   3'- gcaUGCCA--------GCGUGcg-CUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 216880 0.66 0.99273
Target:  5'- --gACGGUCGUuCGCGGC--GGCGCg -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGguUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 23216 0.66 0.99273
Target:  5'- cCGUGCaGG-CGCACG-GACUcuGGACGCg -3'
miRNA:   3'- -GCAUG-CCaGCGUGCgCUGG--UUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 154893 0.66 0.99273
Target:  5'- --cGgGGUCGacgauCGCGCGAUCGAAgcCGCCg -3'
miRNA:   3'- gcaUgCCAGC-----GUGCGCUGGUUU--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 131878 0.66 0.99273
Target:  5'- -uUGauGUUGCACGCGAUgc-GCACCg -3'
miRNA:   3'- gcAUgcCAGCGUGCGCUGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 160607 0.66 0.99273
Target:  5'- --aGCaGGUCgGCGCGC-ACCuGGCGCCc -3'
miRNA:   3'- gcaUG-CCAG-CGUGCGcUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 219056 0.66 0.99273
Target:  5'- cCG-AUGG-CGCuauuauuuACGC-ACCAGACACCg -3'
miRNA:   3'- -GCaUGCCaGCG--------UGCGcUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 721 0.66 0.99273
Target:  5'- uCGUAacgcgacgcCGGUgaCGCaACGCGACCAGcguGCCg -3'
miRNA:   3'- -GCAU---------GCCA--GCG-UGCGCUGGUUug-UGG- -5'
16068 5' -52.9 NC_004065.1 + 89877 0.66 0.99273
Target:  5'- uGUcgACGG-CGCcauCGuCGGCCccGAACACCa -3'
miRNA:   3'- gCA--UGCCaGCGu--GC-GCUGG--UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 131869 0.66 0.99273
Target:  5'- aGgcgGCGGUgGCgGCgGCGACUAu-CACCg -3'
miRNA:   3'- gCa--UGCCAgCG-UG-CGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 138761 0.66 0.99273
Target:  5'- gGUGCaGGUCG-GCGCGGUCGAugGCg -3'
miRNA:   3'- gCAUG-CCAGCgUGCGCUGGUUugUGg -5'
16068 5' -52.9 NC_004065.1 + 156889 0.66 0.99273
Target:  5'- -cUGgGGUCGCGCGuCGGggucCCGAuccuccgccgGCACCg -3'
miRNA:   3'- gcAUgCCAGCGUGC-GCU----GGUU----------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 161847 0.66 0.992433
Target:  5'- --gGCGGggccgacagcuccgUCGCGCGCGccGCCGcgauCACCg -3'
miRNA:   3'- gcaUGCC--------------AGCGUGCGC--UGGUuu--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 27526 0.67 0.991811
Target:  5'- --cGCGGcgugccuccaccacUCGCACGCG-CCGcaggucgacaucauaAACACCu -3'
miRNA:   3'- gcaUGCC--------------AGCGUGCGCuGGU---------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 149139 0.67 0.991703
Target:  5'- uGUGCGGgagaacguacaUCGCucucUGCuGGCCGAGCugCu -3'
miRNA:   3'- gCAUGCC-----------AGCGu---GCG-CUGGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 125103 0.67 0.991703
Target:  5'- -uUGCGGUaGUGCGUGuacGCCGccGGCACCa -3'
miRNA:   3'- gcAUGCCAgCGUGCGC---UGGU--UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.