miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 149139 0.67 0.991703
Target:  5'- uGUGCGGgagaacguacaUCGCucucUGCuGGCCGAGCugCu -3'
miRNA:   3'- gCAUGCC-----------AGCGu---GCG-CUGGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 79551 0.67 0.991703
Target:  5'- --gGCGGUCG-AUGCGGCgCAGcgGCGCUu -3'
miRNA:   3'- gcaUGCCAGCgUGCGCUG-GUU--UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 88959 0.67 0.991703
Target:  5'- --cACGGgcUCGCGCGUgaugguGGCCAccuggGGCGCCu -3'
miRNA:   3'- gcaUGCC--AGCGUGCG------CUGGU-----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 30138 0.67 0.991703
Target:  5'- --gGCGGgUgGCGgaGCGACCGGAC-CCa -3'
miRNA:   3'- gcaUGCC-AgCGUg-CGCUGGUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 60706 0.67 0.991703
Target:  5'- uCGaACGG-CGCGCGgGACUuacAACGCg -3'
miRNA:   3'- -GCaUGCCaGCGUGCgCUGGu--UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 78279 0.67 0.991703
Target:  5'- gCGUGCGGUgGUcguaGCGGCUcucGAGgGCCu -3'
miRNA:   3'- -GCAUGCCAgCGug--CGCUGG---UUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 125103 0.67 0.991703
Target:  5'- -uUGCGGUaGUGCGUGuacGCCGccGGCACCa -3'
miRNA:   3'- gcAUGCCAgCGUGCGC---UGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 128584 0.67 0.991485
Target:  5'- aCGUcgGCGGcgaaggcgcaucCGCACGCG-CCAGcCGCCc -3'
miRNA:   3'- -GCA--UGCCa-----------GCGUGCGCuGGUUuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 72463 0.67 0.991374
Target:  5'- gGUACGacgagcgagacgguGUCG-GCGCGGCUGAAgACCg -3'
miRNA:   3'- gCAUGC--------------CAGCgUGCGCUGGUUUgUGG- -5'
16068 5' -52.9 NC_004065.1 + 115063 0.67 0.990566
Target:  5'- --aACGG-CGCGCGCGA--GGACGCg -3'
miRNA:   3'- gcaUGCCaGCGUGCGCUggUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 50331 0.67 0.990566
Target:  5'- ---gUGGUgGCACGCGugGCCAc-CGCCg -3'
miRNA:   3'- gcauGCCAgCGUGCGC--UGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 81185 0.67 0.990566
Target:  5'- uCGcgGCGGcCGCcuCGUGGCCGAGCGa- -3'
miRNA:   3'- -GCa-UGCCaGCGu-GCGCUGGUUUGUgg -5'
16068 5' -52.9 NC_004065.1 + 60309 0.67 0.990566
Target:  5'- uGUGCaGGUCGCGauagaGCGucaggagcuuGCCG-GCGCCg -3'
miRNA:   3'- gCAUG-CCAGCGUg----CGC----------UGGUuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 173452 0.67 0.990566
Target:  5'- aCGUAcCGGUgGCgGCGCucGACgCcAGCACCg -3'
miRNA:   3'- -GCAU-GCCAgCG-UGCG--CUG-GuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 194788 0.67 0.990566
Target:  5'- ----gGGUCGCGCaggGCGAUCGucgagccccugAACGCCg -3'
miRNA:   3'- gcaugCCAGCGUG---CGCUGGU-----------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 39720 0.67 0.990566
Target:  5'- cCGUAucucCGaaCGC-CGCGACCGGAuCGCCg -3'
miRNA:   3'- -GCAU----GCcaGCGuGCGCUGGUUU-GUGG- -5'
16068 5' -52.9 NC_004065.1 + 30819 0.67 0.990566
Target:  5'- cCGUcGCGGUgCGCGuccuCGCGACCcucGACgaaGCCg -3'
miRNA:   3'- -GCA-UGCCA-GCGU----GCGCUGGu--UUG---UGG- -5'
16068 5' -52.9 NC_004065.1 + 169849 0.67 0.990566
Target:  5'- cCGUGCGGgccaGCGuCGACCugugcauggcGGGCGCCg -3'
miRNA:   3'- -GCAUGCCagcgUGC-GCUGG----------UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 68145 0.67 0.990566
Target:  5'- gCGU-CGGUCagGC-CGcCGAUgGAGCACCu -3'
miRNA:   3'- -GCAuGCCAG--CGuGC-GCUGgUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 67558 0.67 0.990566
Target:  5'- uGgcCGGcCGCGCGaGGCCuu-CGCCg -3'
miRNA:   3'- gCauGCCaGCGUGCgCUGGuuuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.