miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 349 0.67 0.987925
Target:  5'- cCGaGCGGaCGCGCGC--CCcGACGCCc -3'
miRNA:   3'- -GCaUGCCaGCGUGCGcuGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 532 0.75 0.783442
Target:  5'- --cGCGGUgGCGCGCccccuGugCGAGCGCCc -3'
miRNA:   3'- gcaUGCCAgCGUGCG-----CugGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 573 0.66 0.994478
Target:  5'- --aACGGg-GCugGCGGCa--GCGCCa -3'
miRNA:   3'- gcaUGCCagCGugCGCUGguuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 654 0.69 0.96545
Target:  5'- gCGUcCGGcCGCGCGU-AgCGAGCACCc -3'
miRNA:   3'- -GCAuGCCaGCGUGCGcUgGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 721 0.66 0.99273
Target:  5'- uCGUAacgcgacgcCGGUgaCGCaACGCGACCAGcguGCCg -3'
miRNA:   3'- -GCAU---------GCCA--GCG-UGCGCUGGUUug-UGG- -5'
16068 5' -52.9 NC_004065.1 + 5215 0.66 0.99587
Target:  5'- aCGgacagACGG-CGguCGUGACCGuGCuGCCg -3'
miRNA:   3'- -GCa----UGCCaGCguGCGCUGGUuUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 6495 0.74 0.809841
Target:  5'- cCGcACGGUCGgGuCGCGGCC-GGCACUa -3'
miRNA:   3'- -GCaUGCCAGCgU-GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 9431 0.66 0.99587
Target:  5'- -aUACGGUggagaucagCgGCACGUGGCgAAACACg -3'
miRNA:   3'- gcAUGCCA---------G-CGUGCGCUGgUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 12634 0.66 0.995215
Target:  5'- aCGUcGCGGuUCGaCACgGCGAaCC--GCACCa -3'
miRNA:   3'- -GCA-UGCC-AGC-GUG-CGCU-GGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 15912 0.68 0.976528
Target:  5'- uGU-CGG-CGCGUGCGACCGGccGCACg -3'
miRNA:   3'- gCAuGCCaGCGUGCGCUGGUU--UGUGg -5'
16068 5' -52.9 NC_004065.1 + 16542 0.77 0.668477
Target:  5'- gCGUcgACGGUCGCG-GCGACCGcuccgacuACACCu -3'
miRNA:   3'- -GCA--UGCCAGCGUgCGCUGGUu-------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 17430 0.69 0.962187
Target:  5'- --aGCGGUCGuUugGCGGCCucucuggcGACACg -3'
miRNA:   3'- gcaUGCCAGC-GugCGCUGGu-------UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 17675 0.68 0.982935
Target:  5'- cCG-ACGGUCGUccguCGCG-CCAu-CGCCg -3'
miRNA:   3'- -GCaUGCCAGCGu---GCGCuGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 19762 0.66 0.994478
Target:  5'- gCGUGCGGgggUGUggGCGACgGA--GCCg -3'
miRNA:   3'- -GCAUGCCa--GCGugCGCUGgUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 19795 0.66 0.993652
Target:  5'- uCGUccGCGGUCGUcuCGUGGCaCAgggGACACg -3'
miRNA:   3'- -GCA--UGCCAGCGu-GCGCUG-GU---UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 21679 0.7 0.951131
Target:  5'- --gACGGUCGCggucagauACGCGACCGcGAUcCCu -3'
miRNA:   3'- gcaUGCCAGCG--------UGCGCUGGU-UUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 22068 0.71 0.91755
Target:  5'- gGU-CGGUCGCG-GCGGCCcAAC-CCg -3'
miRNA:   3'- gCAuGCCAGCGUgCGCUGGuUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 22218 0.67 0.989309
Target:  5'- cCG-ACGGUCGCGa-UGACCGucaucgugccGGCGCCc -3'
miRNA:   3'- -GCaUGCCAGCGUgcGCUGGU----------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 23216 0.66 0.99273
Target:  5'- cCGUGCaGG-CGCACG-GACUcuGGACGCg -3'
miRNA:   3'- -GCAUG-CCaGCGUGCgCUGG--UUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 23457 0.67 0.989309
Target:  5'- cCGUA---UCGCGCGCGGCuCGcgacgaugacGACGCCg -3'
miRNA:   3'- -GCAUgccAGCGUGCGCUG-GU----------UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.