miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 23679 0.66 0.99273
Target:  5'- --cACGGUuccccgucCGUACcgaGGCCAGACACCc -3'
miRNA:   3'- gcaUGCCA--------GCGUGcg-CUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 24577 0.69 0.971373
Target:  5'- uCGcGCGGUC-CGCGCGugUcguCGCCg -3'
miRNA:   3'- -GCaUGCCAGcGUGCGCugGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 25838 0.67 0.986407
Target:  5'- aGUacGCGGUUGCGa-CGuCCAGACugCg -3'
miRNA:   3'- gCA--UGCCAGCGUgcGCuGGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 26041 0.73 0.858288
Target:  5'- --aGCGGcUCGCACGCGGCguCGAACcgcgaGCCg -3'
miRNA:   3'- gcaUGCC-AGCGUGCGCUG--GUUUG-----UGG- -5'
16068 5' -52.9 NC_004065.1 + 27333 0.66 0.993652
Target:  5'- aCGcGCGGaacCGcCAUGCGACCuaccGAugACCa -3'
miRNA:   3'- -GCaUGCCa--GC-GUGCGCUGG----UUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 27526 0.67 0.991811
Target:  5'- --cGCGGcgugccuccaccacUCGCACGCG-CCGcaggucgacaucauaAACACCu -3'
miRNA:   3'- gcaUGCC--------------AGCGUGCGCuGGU---------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 28994 0.68 0.97816
Target:  5'- cCGgcgGCGGUggcgaggcgccgcgCGCACGCGGCCucgagucAgACCg -3'
miRNA:   3'- -GCa--UGCCA--------------GCGUGCGCUGGuu-----UgUGG- -5'
16068 5' -52.9 NC_004065.1 + 29128 0.71 0.92828
Target:  5'- aGgcCGGUCGCccaGCGCGACgGGcaGCCg -3'
miRNA:   3'- gCauGCCAGCG---UGCGCUGgUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 29781 0.66 0.99587
Target:  5'- aCGUACGGgggCGCuccgGCG-GGCCGuuacACGCUg -3'
miRNA:   3'- -GCAUGCCa--GCG----UGCgCUGGUu---UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 29984 0.68 0.982935
Target:  5'- gCGgcgGCGGcagugguaUCGCcagaggcuGCGCGACCGu-CACCg -3'
miRNA:   3'- -GCa--UGCC--------AGCG--------UGCGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 30138 0.67 0.991703
Target:  5'- --gGCGGgUgGCGgaGCGACCGGAC-CCa -3'
miRNA:   3'- gcaUGCC-AgCGUg-CGCUGGUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 30819 0.67 0.990566
Target:  5'- cCGUcGCGGUgCGCGuccuCGCGACCcucGACgaaGCCg -3'
miRNA:   3'- -GCA-UGCCA-GCGU----GCGCUGGu--UUG---UGG- -5'
16068 5' -52.9 NC_004065.1 + 32229 0.78 0.588634
Target:  5'- --cGCGGgCGCugGUGACCAacgcgGACACCg -3'
miRNA:   3'- gcaUGCCaGCGugCGCUGGU-----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 32744 0.69 0.958357
Target:  5'- uGUGgGaGUCGCucccCGUGACCGAugauccgGCACCc -3'
miRNA:   3'- gCAUgC-CAGCGu---GCGCUGGUU-------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 34249 0.68 0.978833
Target:  5'- --cGCGGUcCGCcauggucaGCGCGACacGGCGCCg -3'
miRNA:   3'- gcaUGCCA-GCG--------UGCGCUGguUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 34990 0.66 0.995808
Target:  5'- cCGUGCgcccuGGUCauggacgaGCGCGGCCGcuucuuccuguacGACGCCg -3'
miRNA:   3'- -GCAUG-----CCAGcg------UGCGCUGGU-------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 35721 0.71 0.91755
Target:  5'- ---cUGGUacCGCugGCGACUcgGCGCCa -3'
miRNA:   3'- gcauGCCA--GCGugCGCUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 37201 0.67 0.989309
Target:  5'- --aGCGGcugccucaaGCGCaGCGcCCAGACGCCg -3'
miRNA:   3'- gcaUGCCag-------CGUG-CGCuGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 37441 0.69 0.958716
Target:  5'- -aUGCGGUCGacgaGCGUGACac--CACCg -3'
miRNA:   3'- gcAUGCCAGCg---UGCGCUGguuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 38444 0.67 0.987925
Target:  5'- aCG-ACGGUUuuCGCGCG-CCGAuCACCg -3'
miRNA:   3'- -GCaUGCCAGc-GUGCGCuGGUUuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.