miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 38705 0.67 0.987925
Target:  5'- gCGcgAUGGugUCaCGCGCGGCC-GGCACCa -3'
miRNA:   3'- -GCa-UGCC--AGcGUGCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 39401 0.7 0.951131
Target:  5'- --gAUGcGUCGCACGCaaguuggucggGGCCGagGACGCCa -3'
miRNA:   3'- gcaUGC-CAGCGUGCG-----------CUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 39720 0.67 0.990566
Target:  5'- cCGUAucucCGaaCGC-CGCGACCGGAuCGCCg -3'
miRNA:   3'- -GCAU----GCcaGCGuGCGCUGGUUU-GUGG- -5'
16068 5' -52.9 NC_004065.1 + 40947 0.68 0.980967
Target:  5'- aCGUGCcGGUUuCGCGUaacuCCGGACACCc -3'
miRNA:   3'- -GCAUG-CCAGcGUGCGcu--GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 41500 0.67 0.987925
Target:  5'- uCGggACGGggaGCGCGCGGgCGGuccCGCCa -3'
miRNA:   3'- -GCa-UGCCag-CGUGCGCUgGUUu--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 41669 0.68 0.982935
Target:  5'- aCGUGCGcccccUCGCugG-GGCUGAGCAUCg -3'
miRNA:   3'- -GCAUGCc----AGCGugCgCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 42036 0.71 0.923029
Target:  5'- gCGaGCcauGUUGCGCGCGGCCGcagcuGCACCc -3'
miRNA:   3'- -GCaUGc--CAGCGUGCGCUGGUu----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 42092 0.7 0.942667
Target:  5'- uGUGCGcGUCGCcggcgccgacguACGUGACCGuuuuGGCGCa -3'
miRNA:   3'- gCAUGC-CAGCG------------UGCGCUGGU----UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 43085 0.76 0.717704
Target:  5'- aCGUucggACGGUCcggGCAucCGCGACCcGGCGCCg -3'
miRNA:   3'- -GCA----UGCCAG---CGU--GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 44086 0.69 0.962187
Target:  5'- aCGUAC-GUgGCGCGCG-UCAAACAUUa -3'
miRNA:   3'- -GCAUGcCAgCGUGCGCuGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 45517 0.69 0.962187
Target:  5'- aCGUcggACGGUC-UACGCcACCcGGCGCCg -3'
miRNA:   3'- -GCA---UGCCAGcGUGCGcUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 45623 0.67 0.986407
Target:  5'- --aACGGUCGagaCACgGCGuCCGcGACACCg -3'
miRNA:   3'- gcaUGCCAGC---GUG-CGCuGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 45841 0.72 0.872944
Target:  5'- uCGgacCGGcCGCACGgGACgCGAugGCCg -3'
miRNA:   3'- -GCau-GCCaGCGUGCgCUG-GUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 48476 0.68 0.984746
Target:  5'- gGUGCcguaGUCGC-CGCGAUaGAGCAUCa -3'
miRNA:   3'- gCAUGc---CAGCGuGCGCUGgUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 50331 0.67 0.990566
Target:  5'- ---gUGGUgGCACGCGugGCCAc-CGCCg -3'
miRNA:   3'- gcauGCCAgCGUGCGC--UGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 50438 0.7 0.955032
Target:  5'- --cGCGGUCGCACaCG-CguGGCGCCc -3'
miRNA:   3'- gcaUGCCAGCGUGcGCuGguUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 53230 0.66 0.994478
Target:  5'- gGUcUGG-CGCACGCG-CCu--CGCCu -3'
miRNA:   3'- gCAuGCCaGCGUGCGCuGGuuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 53288 0.68 0.974043
Target:  5'- gCGUAgauGUUGUACGCGAaCCAGGCcCCa -3'
miRNA:   3'- -GCAUgc-CAGCGUGCGCU-GGUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 53856 0.66 0.995215
Target:  5'- uCGcgGCGGUCGCGC-CGG--GAugGCCa -3'
miRNA:   3'- -GCa-UGCCAGCGUGcGCUggUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 55492 0.69 0.962187
Target:  5'- -uUGCGGaaUCGCAUGaCG-CCGAGCACg -3'
miRNA:   3'- gcAUGCC--AGCGUGC-GCuGGUUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.