miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 229364 0.75 0.746469
Target:  5'- gCGaGCGGgugcUCGCuacGCGCGGCCGGACGCa -3'
miRNA:   3'- -GCaUGCC----AGCG---UGCGCUGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 226776 0.67 0.986407
Target:  5'- --aAUGGUUaCACGCagGACCAAcCACCa -3'
miRNA:   3'- gcaUGCCAGcGUGCG--CUGGUUuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 222618 0.66 0.99587
Target:  5'- aCGUACcGUCGCACcuGCGGCgGucGGC-CCu -3'
miRNA:   3'- -GCAUGcCAGCGUG--CGCUGgU--UUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 222197 0.68 0.984746
Target:  5'- --gAUGGUUGCGCGacaCGACCccauuCACCg -3'
miRNA:   3'- gcaUGCCAGCGUGC---GCUGGuuu--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 219056 0.66 0.99273
Target:  5'- cCG-AUGG-CGCuauuauuuACGC-ACCAGACACCg -3'
miRNA:   3'- -GCaUGCCaGCG--------UGCGcUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 216880 0.66 0.99273
Target:  5'- --gACGGUCGUuCGCGGC--GGCGCg -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGguUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 214116 0.76 0.727374
Target:  5'- gCGgcCGGUCGCACGCG-CCGacaauaaaagGACGCg -3'
miRNA:   3'- -GCauGCCAGCGUGCGCuGGU----------UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 213485 0.87 0.230017
Target:  5'- --aGCGGUCGC-CGCGACCGucGACGCCa -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 211475 0.7 0.955032
Target:  5'- cCGUuCGG-C-CAUGCGAgCCAGGCGCCc -3'
miRNA:   3'- -GCAuGCCaGcGUGCGCU-GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 210012 0.69 0.958716
Target:  5'- uGUGcCGGUCGCACGaacaucACCAcACGCg -3'
miRNA:   3'- gCAU-GCCAGCGUGCgc----UGGUuUGUGg -5'
16068 5' -52.9 NC_004065.1 + 208725 0.71 0.92828
Target:  5'- --gGCGGUCguGCACGgauguucggaauCGACCAuGACGCCg -3'
miRNA:   3'- gcaUGCCAG--CGUGC------------GCUGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 208344 0.66 0.995215
Target:  5'- --cGCGGUCGCGuaucugacCGCGACCGucUAUUc -3'
miRNA:   3'- gcaUGCCAGCGU--------GCGCUGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 207960 0.76 0.707964
Target:  5'- gGUugGGcCGC-CGCGACCGaccggaggGAUACCg -3'
miRNA:   3'- gCAugCCaGCGuGCGCUGGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 204509 0.74 0.815809
Target:  5'- uCGUGCGcG-CGCACgGCGagaccgucguggucGCCAGACGCCu -3'
miRNA:   3'- -GCAUGC-CaGCGUG-CGC--------------UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 203995 0.68 0.980967
Target:  5'- gCGUGCGaGcCGCugGUGGac-GACGCCg -3'
miRNA:   3'- -GCAUGC-CaGCGugCGCUgguUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 203126 0.75 0.736965
Target:  5'- gCGUGCGGUCGa--GCGGCCucuGgACCg -3'
miRNA:   3'- -GCAUGCCAGCgugCGCUGGuu-UgUGG- -5'
16068 5' -52.9 NC_004065.1 + 202313 0.68 0.978833
Target:  5'- gCGcGCGa--GCACG-GGCCAGACGCCc -3'
miRNA:   3'- -GCaUGCcagCGUGCgCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 202182 0.71 0.911843
Target:  5'- --cGCGGUgaUGUucAgGCGGCCGAGCACCc -3'
miRNA:   3'- gcaUGCCA--GCG--UgCGCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 201544 0.73 0.865716
Target:  5'- --cGCGG-CGC-UGuCGGCCAGACGCCa -3'
miRNA:   3'- gcaUGCCaGCGuGC-GCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 201483 0.72 0.893375
Target:  5'- uCGUGCGGcgcaGCAUGCGG-CGGGCGCUa -3'
miRNA:   3'- -GCAUGCCag--CGUGCGCUgGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.