miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 200453 0.69 0.963517
Target:  5'- --cGCGGcCGCcgucagauagcgggaGCGCGGCCuGAUGCCg -3'
miRNA:   3'- gcaUGCCaGCG---------------UGCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 200020 0.67 0.987925
Target:  5'- cCGgugACGGUCGCGCagccucugGCGAuaCCAcugcCGCCg -3'
miRNA:   3'- -GCa--UGCCAGCGUG--------CGCU--GGUuu--GUGG- -5'
16068 5' -52.9 NC_004065.1 + 199869 0.67 0.987779
Target:  5'- uCGU-CGGUgcCGCACagcacgaGCGGCCGGuCGCCc -3'
miRNA:   3'- -GCAuGCCA--GCGUG-------CGCUGGUUuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 199554 0.66 0.993652
Target:  5'- ---cCGGgCGCGCcccaucgugccGCGGuCCAGACGCCg -3'
miRNA:   3'- gcauGCCaGCGUG-----------CGCU-GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 199514 0.73 0.850664
Target:  5'- aCGcgGCGGcCGCcacguGCGCGcaGCCGGGCGCCu -3'
miRNA:   3'- -GCa-UGCCaGCG-----UGCGC--UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 198638 0.66 0.995215
Target:  5'- ----aGGUUGCGCGCcACCAggUGCa -3'
miRNA:   3'- gcaugCCAGCGUGCGcUGGUuuGUGg -5'
16068 5' -52.9 NC_004065.1 + 198538 0.68 0.984572
Target:  5'- uGUACcucagccgcaccaGGUcCGCGCGCGGCaCGGACcGCUg -3'
miRNA:   3'- gCAUG-------------CCA-GCGUGCGCUG-GUUUG-UGG- -5'
16068 5' -52.9 NC_004065.1 + 198310 0.66 0.99424
Target:  5'- uGUGCGGggagcucaccgucaUCgGCACGC--UCGGGCACCg -3'
miRNA:   3'- gCAUGCC--------------AG-CGUGCGcuGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 198001 0.68 0.984746
Target:  5'- aGUGCGGgcaccuggGCAUGCucuCCAGACGCUc -3'
miRNA:   3'- gCAUGCCag------CGUGCGcu-GGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 197156 0.66 0.994478
Target:  5'- ---cCGG-CGCGCcucuCGACCAggGACGCCa -3'
miRNA:   3'- gcauGCCaGCGUGc---GCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 196381 0.7 0.951131
Target:  5'- cCGgACGGUCGaaGCGCGccCCGAACGCg -3'
miRNA:   3'- -GCaUGCCAGCg-UGCGCu-GGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 195071 0.72 0.872944
Target:  5'- aGUGCaGGUCgggcgaGCGCGCGGCgCAGACcCCc -3'
miRNA:   3'- gCAUG-CCAG------CGUGCGCUG-GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 194788 0.67 0.990566
Target:  5'- ----gGGUCGCGCaggGCGAUCGucgagccccugAACGCCg -3'
miRNA:   3'- gcaugCCAGCGUG---CGCUGGU-----------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 194112 0.68 0.978833
Target:  5'- cCGaACGGUCGcCAUGCGggagguuucGCCAuuUGCCa -3'
miRNA:   3'- -GCaUGCCAGC-GUGCGC---------UGGUuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 192287 0.66 0.993386
Target:  5'- cCGUcucuCGGUgcgauccagcuucaCGCGCGUGuCCGGGCACg -3'
miRNA:   3'- -GCAu---GCCA--------------GCGUGCGCuGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 191575 0.73 0.850664
Target:  5'- gCGUGCGGUgaucgGCGCGCGAaaaCCGucgucguaGACGCCu -3'
miRNA:   3'- -GCAUGCCAg----CGUGCGCU---GGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 191414 0.69 0.971095
Target:  5'- aGUAUgaaGGUCGCGCGCGAgaugugcUCGGugACg -3'
miRNA:   3'- gCAUG---CCAGCGUGCGCU-------GGUUugUGg -5'
16068 5' -52.9 NC_004065.1 + 191317 0.68 0.974043
Target:  5'- gGUGcCGGcCGCGCGUGAcaCCAucGCGCUc -3'
miRNA:   3'- gCAU-GCCaGCGUGCGCU--GGUu-UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 189743 0.7 0.942667
Target:  5'- aGUGCGGgcucaugucuUCGUACcCGGCgGGGCGCCc -3'
miRNA:   3'- gCAUGCC----------AGCGUGcGCUGgUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 188604 0.68 0.974043
Target:  5'- cCGUcuCGGUcCGuCACGgGACCGuguCGCCg -3'
miRNA:   3'- -GCAu-GCCA-GC-GUGCgCUGGUuu-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.