miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 91199 0.72 0.893375
Target:  5'- cCGU-CGG-CGUGCGCGGCaucGGCGCCg -3'
miRNA:   3'- -GCAuGCCaGCGUGCGCUGgu-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 199514 0.73 0.850664
Target:  5'- aCGcgGCGGcCGCcacguGCGCGcaGCCGGGCGCCu -3'
miRNA:   3'- -GCa-UGCCaGCG-----UGCGC--UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 26041 0.73 0.858288
Target:  5'- --aGCGGcUCGCACGCGGCguCGAACcgcgaGCCg -3'
miRNA:   3'- gcaUGCC-AGCGUGCGCUG--GUUUG-----UGG- -5'
16068 5' -52.9 NC_004065.1 + 60982 0.73 0.858288
Target:  5'- gCGUACGGcCGCA-GCG-CCuuGCACUg -3'
miRNA:   3'- -GCAUGCCaGCGUgCGCuGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 201544 0.73 0.865716
Target:  5'- --cGCGG-CGC-UGuCGGCCAGACGCCa -3'
miRNA:   3'- gcaUGCCaGCGuGC-GCUGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 63508 0.73 0.865716
Target:  5'- gGUGCGGauggccUCGCccuCGCGGCCGuagauCGCCg -3'
miRNA:   3'- gCAUGCC------AGCGu--GCGCUGGUuu---GUGG- -5'
16068 5' -52.9 NC_004065.1 + 45841 0.72 0.872944
Target:  5'- uCGgacCGGcCGCACGgGACgCGAugGCCg -3'
miRNA:   3'- -GCau-GCCaGCGUGCgCUG-GUUugUGG- -5'
16068 5' -52.9 NC_004065.1 + 195071 0.72 0.872944
Target:  5'- aGUGCaGGUCgggcgaGCGCGCGGCgCAGACcCCc -3'
miRNA:   3'- gCAUG-CCAG------CGUGCGCUG-GUUUGuGG- -5'
16068 5' -52.9 NC_004065.1 + 64456 0.72 0.879966
Target:  5'- --aACuGUCGCGcCGUGGCCGAGCugCu -3'
miRNA:   3'- gcaUGcCAGCGU-GCGCUGGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 191575 0.73 0.850664
Target:  5'- gCGUGCGGUgaucgGCGCGCGAaaaCCGucgucguaGACGCCu -3'
miRNA:   3'- -GCAUGCCAg----CGUGCGCU---GGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 123532 0.74 0.818343
Target:  5'- gGUGUGGUCGUACaggGUGGCC-AGCGCCg -3'
miRNA:   3'- gCAUGCCAGCGUG---CGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 56635 0.74 0.792382
Target:  5'- -aUGCGGUgGCA-GCGGCCGcGGCACCc -3'
miRNA:   3'- gcAUGCCAgCGUgCGCUGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 213485 0.87 0.230017
Target:  5'- --aGCGGUCGC-CGCGACCGucGACGCCa -3'
miRNA:   3'- gcaUGCCAGCGuGCGCUGGU--UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 142837 0.78 0.588634
Target:  5'- -cUGCGGUCGCGCGaCGACC--GCGCg -3'
miRNA:   3'- gcAUGCCAGCGUGC-GCUGGuuUGUGg -5'
16068 5' -52.9 NC_004065.1 + 43085 0.76 0.717704
Target:  5'- aCGUucggACGGUCcggGCAucCGCGACCcGGCGCCg -3'
miRNA:   3'- -GCA----UGCCAG---CGU--GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 68166 0.76 0.717704
Target:  5'- uCGcgGCGG-CGCGCGCGACgGAGCugUc -3'
miRNA:   3'- -GCa-UGCCaGCGUGCGCUGgUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 68805 0.76 0.727374
Target:  5'- aCGUGCGGgCGCuGCGCGAggUCGAGCugCu -3'
miRNA:   3'- -GCAUGCCaGCG-UGCGCU--GGUUUGugG- -5'
16068 5' -52.9 NC_004065.1 + 214116 0.76 0.727374
Target:  5'- gCGgcCGGUCGCACGCG-CCGacaauaaaagGACGCg -3'
miRNA:   3'- -GCauGCCAGCGUGCGCuGGU----------UUGUGg -5'
16068 5' -52.9 NC_004065.1 + 229364 0.75 0.746469
Target:  5'- gCGaGCGGgugcUCGCuacGCGCGGCCGGACGCa -3'
miRNA:   3'- -GCaUGCC----AGCG---UGCGCUGGUUUGUGg -5'
16068 5' -52.9 NC_004065.1 + 168928 0.75 0.755877
Target:  5'- cCGUcACGG-CGUACGCGACgCAGagcagcGCGCCg -3'
miRNA:   3'- -GCA-UGCCaGCGUGCGCUG-GUU------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.