Results 21 - 40 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 5' | -52.9 | NC_004065.1 | + | 91199 | 0.72 | 0.893375 |
Target: 5'- cCGU-CGG-CGUGCGCGGCaucGGCGCCg -3' miRNA: 3'- -GCAuGCCaGCGUGCGCUGgu-UUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 64456 | 0.72 | 0.879966 |
Target: 5'- --aACuGUCGCGcCGUGGCCGAGCugCu -3' miRNA: 3'- gcaUGcCAGCGU-GCGCUGGUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 168928 | 0.75 | 0.755877 |
Target: 5'- cCGUcACGG-CGUACGCGACgCAGagcagcGCGCCg -3' miRNA: 3'- -GCA-UGCCaGCGUGCGCUG-GUU------UGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 229364 | 0.75 | 0.746469 |
Target: 5'- gCGaGCGGgugcUCGCuacGCGCGGCCGGACGCa -3' miRNA: 3'- -GCaUGCC----AGCG---UGCGCUGGUUUGUGg -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 214116 | 0.76 | 0.727374 |
Target: 5'- gCGgcCGGUCGCACGCG-CCGacaauaaaagGACGCg -3' miRNA: 3'- -GCauGCCAGCGUGCGCuGGU----------UUGUGg -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 68805 | 0.76 | 0.727374 |
Target: 5'- aCGUGCGGgCGCuGCGCGAggUCGAGCugCu -3' miRNA: 3'- -GCAUGCCaGCG-UGCGCU--GGUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 68166 | 0.76 | 0.717704 |
Target: 5'- uCGcgGCGG-CGCGCGCGACgGAGCugUc -3' miRNA: 3'- -GCa-UGCCaGCGUGCGCUGgUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 43085 | 0.76 | 0.717704 |
Target: 5'- aCGUucggACGGUCcggGCAucCGCGACCcGGCGCCg -3' miRNA: 3'- -GCA----UGCCAG---CGU--GCGCUGGuUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 142837 | 0.78 | 0.588634 |
Target: 5'- -cUGCGGUCGCGCGaCGACC--GCGCg -3' miRNA: 3'- gcAUGCCAGCGUGC-GCUGGuuUGUGg -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 213485 | 0.87 | 0.230017 |
Target: 5'- --aGCGGUCGC-CGCGACCGucGACGCCa -3' miRNA: 3'- gcaUGCCAGCGuGCGCUGGU--UUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 56635 | 0.74 | 0.792382 |
Target: 5'- -aUGCGGUgGCA-GCGGCCGcGGCACCc -3' miRNA: 3'- gcAUGCCAgCGUgCGCUGGU-UUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 123532 | 0.74 | 0.818343 |
Target: 5'- gGUGUGGUCGUACaggGUGGCC-AGCGCCg -3' miRNA: 3'- gCAUGCCAGCGUG---CGCUGGuUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 195071 | 0.72 | 0.872944 |
Target: 5'- aGUGCaGGUCgggcgaGCGCGCGGCgCAGACcCCc -3' miRNA: 3'- gCAUG-CCAG------CGUGCGCUG-GUUUGuGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 45841 | 0.72 | 0.872944 |
Target: 5'- uCGgacCGGcCGCACGgGACgCGAugGCCg -3' miRNA: 3'- -GCau-GCCaGCGUGCgCUG-GUUugUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 63508 | 0.73 | 0.865716 |
Target: 5'- gGUGCGGauggccUCGCccuCGCGGCCGuagauCGCCg -3' miRNA: 3'- gCAUGCC------AGCGu--GCGCUGGUuu---GUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 201544 | 0.73 | 0.865716 |
Target: 5'- --cGCGG-CGC-UGuCGGCCAGACGCCa -3' miRNA: 3'- gcaUGCCaGCGuGC-GCUGGUUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 60982 | 0.73 | 0.858288 |
Target: 5'- gCGUACGGcCGCA-GCG-CCuuGCACUg -3' miRNA: 3'- -GCAUGCCaGCGUgCGCuGGuuUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 26041 | 0.73 | 0.858288 |
Target: 5'- --aGCGGcUCGCACGCGGCguCGAACcgcgaGCCg -3' miRNA: 3'- gcaUGCC-AGCGUGCGCUG--GUUUG-----UGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 199514 | 0.73 | 0.850664 |
Target: 5'- aCGcgGCGGcCGCcacguGCGCGcaGCCGGGCGCCu -3' miRNA: 3'- -GCa-UGCCaGCG-----UGCGC--UGGUUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 191575 | 0.73 | 0.850664 |
Target: 5'- gCGUGCGGUgaucgGCGCGCGAaaaCCGucgucguaGACGCCu -3' miRNA: 3'- -GCAUGCCAg----CGUGCGCU---GGU--------UUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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