Results 41 - 60 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16068 | 5' | -52.9 | NC_004065.1 | + | 68805 | 0.76 | 0.727374 |
Target: 5'- aCGUGCGGgCGCuGCGCGAggUCGAGCugCu -3' miRNA: 3'- -GCAUGCCaGCG-UGCGCU--GGUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 68166 | 0.76 | 0.717704 |
Target: 5'- uCGcgGCGG-CGCGCGCGACgGAGCugUc -3' miRNA: 3'- -GCa-UGCCaGCGUGCGCUGgUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 43085 | 0.76 | 0.717704 |
Target: 5'- aCGUucggACGGUCcggGCAucCGCGACCcGGCGCCg -3' miRNA: 3'- -GCA----UGCCAG---CGU--GCGCUGGuUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 142837 | 0.78 | 0.588634 |
Target: 5'- -cUGCGGUCGCGCGaCGACC--GCGCg -3' miRNA: 3'- gcAUGCCAGCGUGC-GCUGGuuUGUGg -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 213485 | 0.87 | 0.230017 |
Target: 5'- --aGCGGUCGC-CGCGACCGucGACGCCa -3' miRNA: 3'- gcaUGCCAGCGuGCGCUGGU--UUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 60982 | 0.73 | 0.858288 |
Target: 5'- gCGUACGGcCGCA-GCG-CCuuGCACUg -3' miRNA: 3'- -GCAUGCCaGCGUgCGCuGGuuUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 201544 | 0.73 | 0.865716 |
Target: 5'- --cGCGG-CGC-UGuCGGCCAGACGCCa -3' miRNA: 3'- gcaUGCCaGCGuGC-GCUGGUUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 121057 | 0.7 | 0.942667 |
Target: 5'- gCGUACuuGGUCGCGaaCGACaCGuACACCa -3' miRNA: 3'- -GCAUG--CCAGCGUgcGCUG-GUuUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 189743 | 0.7 | 0.942667 |
Target: 5'- aGUGCGGgcucaugucuUCGUACcCGGCgGGGCGCCc -3' miRNA: 3'- gCAUGCC----------AGCGUGcGCUGgUUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 113002 | 0.7 | 0.938099 |
Target: 5'- gCGUcuCGGUCgGCACGUGAgCGcGCAUCg -3' miRNA: 3'- -GCAu-GCCAG-CGUGCGCUgGUuUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 85520 | 0.71 | 0.92828 |
Target: 5'- ---cCGGUCGC-CGCGcCCGAAguCGCCg -3' miRNA: 3'- gcauGCCAGCGuGCGCuGGUUU--GUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 29128 | 0.71 | 0.92828 |
Target: 5'- aGgcCGGUCGCccaGCGCGACgGGcaGCCg -3' miRNA: 3'- gCauGCCAGCG---UGCGCUGgUUugUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 59926 | 0.71 | 0.923029 |
Target: 5'- --gACGuuGUCGCgGCGCGGCCAGAaGCCc -3' miRNA: 3'- gcaUGC--CAGCG-UGCGCUGGUUUgUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 22068 | 0.71 | 0.91755 |
Target: 5'- gGU-CGGUCGCG-GCGGCCcAAC-CCg -3' miRNA: 3'- gCAuGCCAGCGUgCGCUGGuUUGuGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 138006 | 0.71 | 0.916989 |
Target: 5'- uGUACGGucugauaUCGCuuGCGACagaAGAUACCc -3' miRNA: 3'- gCAUGCC-------AGCGugCGCUGg--UUUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 91199 | 0.72 | 0.893375 |
Target: 5'- cCGU-CGG-CGUGCGCGGCaucGGCGCCg -3' miRNA: 3'- -GCAuGCCaGCGUGCGCUGgu-UUGUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 64456 | 0.72 | 0.879966 |
Target: 5'- --aACuGUCGCGcCGUGGCCGAGCugCu -3' miRNA: 3'- gcaUGcCAGCGU-GCGCUGGUUUGugG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 195071 | 0.72 | 0.872944 |
Target: 5'- aGUGCaGGUCgggcgaGCGCGCGGCgCAGACcCCc -3' miRNA: 3'- gCAUG-CCAG------CGUGCGCUG-GUUUGuGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 45841 | 0.72 | 0.872944 |
Target: 5'- uCGgacCGGcCGCACGgGACgCGAugGCCg -3' miRNA: 3'- -GCau-GCCaGCGUGCgCUG-GUUugUGG- -5' |
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16068 | 5' | -52.9 | NC_004065.1 | + | 63508 | 0.73 | 0.865716 |
Target: 5'- gGUGCGGauggccUCGCccuCGCGGCCGuagauCGCCg -3' miRNA: 3'- gCAUGCC------AGCGu--GCGCUGGUuu---GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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