miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 111704 0.79 0.539473
Target:  5'- aCGUcgGCGGUccCGCugGCGACgaGAACGCCg -3'
miRNA:   3'- -GCA--UGCCA--GCGugCGCUGg-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 120430 0.72 0.879966
Target:  5'- --gGgGGUCGaGCGCGGCCugauACGCCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGuu--UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 137886 0.72 0.891418
Target:  5'- uGUuuGGUCGCGUGCGACCGuacgucuuuccgucAAUGCCg -3'
miRNA:   3'- gCAugCCAGCGUGCGCUGGU--------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 152242 0.65 0.996284
Target:  5'- aCGUugucGCGGUacgaGCACGCcAUCAGcucgcacagcaggcACACCg -3'
miRNA:   3'- -GCA----UGCCAg---CGUGCGcUGGUU--------------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 207960 0.76 0.707964
Target:  5'- gGUugGGcCGC-CGCGACCGaccggaggGAUACCg -3'
miRNA:   3'- gCAugCCaGCGuGCGCUGGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 87188 0.76 0.707964
Target:  5'- cCGcGCGGUCGuCGCGCGACCgcAggUACUu -3'
miRNA:   3'- -GCaUGCCAGC-GUGCGCUGG--UuuGUGG- -5'
16068 5' -52.9 NC_004065.1 + 170305 0.75 0.736965
Target:  5'- cCGcgACGGUCGCcgugcgcCGCGGCCGcucGGCGCCc -3'
miRNA:   3'- -GCa-UGCCAGCGu------GCGCUGGU---UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 107445 0.75 0.755877
Target:  5'- uCGUGCccauGG-CGCugGCGACCGAGaucaACCa -3'
miRNA:   3'- -GCAUG----CCaGCGugCGCUGGUUUg---UGG- -5'
16068 5' -52.9 NC_004065.1 + 6495 0.74 0.809841
Target:  5'- cCGcACGGUCGgGuCGCGGCC-GGCACUa -3'
miRNA:   3'- -GCaUGCCAGCgU-GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 104878 0.72 0.872944
Target:  5'- gGUGCGGcugaUCGcCACGCGGCUggGCGa- -3'
miRNA:   3'- gCAUGCC----AGC-GUGCGCUGGuuUGUgg -5'
16068 5' -52.9 NC_004065.1 + 204509 0.74 0.815809
Target:  5'- uCGUGCGcG-CGCACgGCGagaccgucguggucGCCAGACGCCu -3'
miRNA:   3'- -GCAUGC-CaGCGUG-CGC--------------UGGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 532 0.75 0.783442
Target:  5'- --cGCGGUgGCGCGCccccuGugCGAGCGCCc -3'
miRNA:   3'- gcaUGCCAgCGUGCG-----CugGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 108965 0.79 0.578717
Target:  5'- uGUACGuGUCGUuCGCGACCAAguACGCg -3'
miRNA:   3'- gCAUGC-CAGCGuGCGCUGGUU--UGUGg -5'
16068 5' -52.9 NC_004065.1 + 94633 0.74 0.818343
Target:  5'- --cGgGGUCGgGCGCGGCCGGcgcguCACCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGUUu----GUGG- -5'
16068 5' -52.9 NC_004065.1 + 32229 0.78 0.588634
Target:  5'- --cGCGGgCGCugGUGACCAacgcgGACACCg -3'
miRNA:   3'- gcaUGCCaGCGugCGCUGGU-----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 125847 0.75 0.780735
Target:  5'- --gACGGUCGUAUccggcaccgaagcgGCGACC-GACACCg -3'
miRNA:   3'- gcaUGCCAGCGUG--------------CGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 61382 0.73 0.834855
Target:  5'- aCG-ACGGUCGC-CGCG-CCGgcuccgcccgcGGCACCa -3'
miRNA:   3'- -GCaUGCCAGCGuGCGCuGGU-----------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 107549 0.72 0.886778
Target:  5'- -cUGCgGGUCGUGCGCuACCgGGACGCCa -3'
miRNA:   3'- gcAUG-CCAGCGUGCGcUGG-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 16542 0.77 0.668477
Target:  5'- gCGUcgACGGUCGCG-GCGACCGcuccgacuACACCu -3'
miRNA:   3'- -GCA--UGCCAGCGUgCGCUGGUu-------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 203126 0.75 0.736965
Target:  5'- gCGUGCGGUCGa--GCGGCCucuGgACCg -3'
miRNA:   3'- -GCAUGCCAGCgugCGCUGGuu-UgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.