miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16068 5' -52.9 NC_004065.1 + 201483 0.72 0.893375
Target:  5'- uCGUGCGGcgcaGCAUGCGG-CGGGCGCUa -3'
miRNA:   3'- -GCAUGCCag--CGUGCGCUgGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 137886 0.72 0.891418
Target:  5'- uGUuuGGUCGCGUGCGACCGuacgucuuuccgucAAUGCCg -3'
miRNA:   3'- gCAugCCAGCGUGCGCUGGU--------------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 532 0.75 0.783442
Target:  5'- --cGCGGUgGCGCGCccccuGugCGAGCGCCc -3'
miRNA:   3'- gcaUGCCAgCGUGCG-----CugGUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 16542 0.77 0.668477
Target:  5'- gCGUcgACGGUCGCG-GCGACCGcuccgacuACACCu -3'
miRNA:   3'- -GCA--UGCCAGCGUgCGCUGGUu-------UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 137486 0.71 0.935249
Target:  5'- gCGUGCGcgcgcccgcccgcccGUaCGCGCGCG-CgAGGCACCg -3'
miRNA:   3'- -GCAUGC---------------CA-GCGUGCGCuGgUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 67362 0.71 0.923029
Target:  5'- aCGcGCGGUCGagcucuagaCACGCcuaGGCUggGCGCCg -3'
miRNA:   3'- -GCaUGCCAGC---------GUGCG---CUGGuuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 120430 0.72 0.879966
Target:  5'- --gGgGGUCGaGCGCGGCCugauACGCCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGuu--UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 32229 0.78 0.588634
Target:  5'- --cGCGGgCGCugGUGACCAacgcgGACACCg -3'
miRNA:   3'- gcaUGCCaGCGugCGCUGGU-----UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 42036 0.71 0.923029
Target:  5'- gCGaGCcauGUUGCGCGCGGCCGcagcuGCACCc -3'
miRNA:   3'- -GCaUGc--CAGCGUGCGCUGGUu----UGUGG- -5'
16068 5' -52.9 NC_004065.1 + 108965 0.79 0.578717
Target:  5'- uGUACGuGUCGUuCGCGACCAAguACGCg -3'
miRNA:   3'- gCAUGC-CAGCGuGCGCUGGUU--UGUGg -5'
16068 5' -52.9 NC_004065.1 + 107549 0.72 0.886778
Target:  5'- -cUGCgGGUCGUGCGCuACCgGGACGCCa -3'
miRNA:   3'- gcAUG-CCAGCGUGCGcUGG-UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 114030 0.72 0.893375
Target:  5'- --cGCGG-CGCACGuCGGCggaCGAGCGCCu -3'
miRNA:   3'- gcaUGCCaGCGUGC-GCUG---GUUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 94633 0.74 0.818343
Target:  5'- --cGgGGUCGgGCGCGGCCGGcgcguCACCg -3'
miRNA:   3'- gcaUgCCAGCgUGCGCUGGUUu----GUGG- -5'
16068 5' -52.9 NC_004065.1 + 6495 0.74 0.809841
Target:  5'- cCGcACGGUCGgGuCGCGGCC-GGCACUa -3'
miRNA:   3'- -GCaUGCCAGCgU-GCGCUGGuUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 170305 0.75 0.736965
Target:  5'- cCGcgACGGUCGCcgugcgcCGCGGCCGcucGGCGCCc -3'
miRNA:   3'- -GCa-UGCCAGCGu------GCGCUGGU---UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 207960 0.76 0.707964
Target:  5'- gGUugGGcCGC-CGCGACCGaccggaggGAUACCg -3'
miRNA:   3'- gCAugCCaGCGuGCGCUGGU--------UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 105305 0.7 0.947011
Target:  5'- gCGUGCGG-CGCGgGCcugaACCugAAGCACCu -3'
miRNA:   3'- -GCAUGCCaGCGUgCGc---UGG--UUUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 105872 0.7 0.938099
Target:  5'- aGU-CGGUguugaCGCugGCGAUCAuGCAUCa -3'
miRNA:   3'- gCAuGCCA-----GCGugCGCUGGUuUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 208725 0.71 0.92828
Target:  5'- --gGCGGUCguGCACGgauguucggaauCGACCAuGACGCCg -3'
miRNA:   3'- gcaUGCCAG--CGUGC------------GCUGGU-UUGUGG- -5'
16068 5' -52.9 NC_004065.1 + 98140 0.71 0.923029
Target:  5'- gCGgcgGCGGUgCGCAuCGCGugCA-ACAUCa -3'
miRNA:   3'- -GCa--UGCCA-GCGU-GCGCugGUuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.