Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1607 | 3' | -58 | NC_001347.2 | + | 154695 | 0.66 | 0.899032 |
Target: 5'- uGAGcGCCGCACGGGgCGCGUaaCUg -3' miRNA: 3'- cCUCuCGGCGUGUCUgGUGCAcgGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 156123 | 1.07 | 0.003349 |
Target: 5'- gGGAGAGCCGCACAGACCACGUGCCUUg -3' miRNA: 3'- -CCUCUCGGCGUGUCUGGUGCACGGAA- -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 158677 | 0.66 | 0.878644 |
Target: 5'- cGGGGcGCgCGCugguuaaACAGACCGCcUGCCa- -3' miRNA: 3'- -CCUCuCG-GCG-------UGUCUGGUGcACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 165544 | 0.66 | 0.879333 |
Target: 5'- -aAGGGCCGCG-AGAgCGCGUGCa-- -3' miRNA: 3'- ccUCUCGGCGUgUCUgGUGCACGgaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 166636 | 0.71 | 0.629798 |
Target: 5'- cGAGAGgCGCGCccGGCCACGcGCCa- -3' miRNA: 3'- cCUCUCgGCGUGu-CUGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 173966 | 0.74 | 0.45747 |
Target: 5'- ---cGGCUagaGCGCGGGCCGCGUGCCUg -3' miRNA: 3'- ccucUCGG---CGUGUCUGGUGCACGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 174721 | 0.71 | 0.629798 |
Target: 5'- aGGAGGGCCuGCGCA-ACUACGcGCCg- -3' miRNA: 3'- -CCUCUCGG-CGUGUcUGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 198974 | 0.68 | 0.792329 |
Target: 5'- cGGuGAGCCGCggcgauucggGCGuGCCGCGaUGCCg- -3' miRNA: 3'- -CCuCUCGGCG----------UGUcUGGUGC-ACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 206705 | 0.72 | 0.60007 |
Target: 5'- uGGGGGCCGCACGGAgCGCGacGUCg- -3' miRNA: 3'- cCUCUCGGCGUGUCUgGUGCa-CGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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