Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1607 | 3' | -58 | NC_001347.2 | + | 206705 | 0.72 | 0.60007 |
Target: 5'- uGGGGGCCGCACGGAgCGCGacGUCg- -3' miRNA: 3'- cCUCUCGGCGUGUCUgGUGCa-CGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 198974 | 0.68 | 0.792329 |
Target: 5'- cGGuGAGCCGCggcgauucggGCGuGCCGCGaUGCCg- -3' miRNA: 3'- -CCuCUCGGCG----------UGUcUGGUGC-ACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 174721 | 0.71 | 0.629798 |
Target: 5'- aGGAGGGCCuGCGCA-ACUACGcGCCg- -3' miRNA: 3'- -CCUCUCGG-CGUGUcUGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 173966 | 0.74 | 0.45747 |
Target: 5'- ---cGGCUagaGCGCGGGCCGCGUGCCUg -3' miRNA: 3'- ccucUCGG---CGUGUCUGGUGCACGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 166636 | 0.71 | 0.629798 |
Target: 5'- cGAGAGgCGCGCccGGCCACGcGCCa- -3' miRNA: 3'- cCUCUCgGCGUGu-CUGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 165544 | 0.66 | 0.879333 |
Target: 5'- -aAGGGCCGCG-AGAgCGCGUGCa-- -3' miRNA: 3'- ccUCUCGGCGUgUCUgGUGCACGgaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 158677 | 0.66 | 0.878644 |
Target: 5'- cGGGGcGCgCGCugguuaaACAGACCGCcUGCCa- -3' miRNA: 3'- -CCUCuCG-GCG-------UGUCUGGUGcACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 156123 | 1.07 | 0.003349 |
Target: 5'- gGGAGAGCCGCACAGACCACGUGCCUUg -3' miRNA: 3'- -CCUCUCGGCGUGUCUGGUGCACGGAA- -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 154695 | 0.66 | 0.899032 |
Target: 5'- uGAGcGCCGCACGGGgCGCGUaaCUg -3' miRNA: 3'- cCUCuCGGCGUGUCUgGUGCAcgGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 152023 | 0.66 | 0.885443 |
Target: 5'- aGGAGAGCCggcaaagaagaggGCGCGGAaaCCAcCGUcgGCCg- -3' miRNA: 3'- -CCUCUCGG-------------CGUGUCU--GGU-GCA--CGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 145650 | 0.73 | 0.522213 |
Target: 5'- cGGAGGGuCCGCGCgacacgcaagAGACCACGacgcGCCUc -3' miRNA: 3'- -CCUCUC-GGCGUG----------UCUGGUGCa---CGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 139283 | 0.69 | 0.764424 |
Target: 5'- uGGAGGcuuacauGcCCGagGCGGAUCGCGUGCCUa -3' miRNA: 3'- -CCUCU-------C-GGCg-UGUCUGGUGCACGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 136025 | 0.66 | 0.905168 |
Target: 5'- cGGAGcgGGCCGCGCccggugcccGGcCCACG-GCCc- -3' miRNA: 3'- -CCUC--UCGGCGUG---------UCuGGUGCaCGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 135457 | 0.67 | 0.834493 |
Target: 5'- aGGGAGCCGcCGCgAGACC-CGgaaGCCg- -3' miRNA: 3'- cCUCUCGGC-GUG-UCUGGuGCa--CGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 126316 | 0.66 | 0.886112 |
Target: 5'- cGAGGGCCagGUGCugcuGACCAUG-GCCUa -3' miRNA: 3'- cCUCUCGG--CGUGu---CUGGUGCaCGGAa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 110470 | 0.68 | 0.77446 |
Target: 5'- ----uGCCGC-UGGACCGCGUGCCc- -3' miRNA: 3'- ccucuCGGCGuGUCUGGUGCACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 105970 | 0.72 | 0.570541 |
Target: 5'- cGGcGAGCCGCGCAcGcCCGCGcgGCCg- -3' miRNA: 3'- -CCuCUCGGCGUGU-CuGGUGCa-CGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 85551 | 0.67 | 0.842435 |
Target: 5'- aGAGcGCCGCgucgugcgaaaGCAGAaacUCGCGUGCCg- -3' miRNA: 3'- cCUCuCGGCG-----------UGUCU---GGUGCACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 79702 | 0.7 | 0.689095 |
Target: 5'- -aAGAGCCGCACAuuGugCaguACGUGCCc- -3' miRNA: 3'- ccUCUCGGCGUGU--CugG---UGCACGGaa -5' |
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1607 | 3' | -58 | NC_001347.2 | + | 78392 | 0.66 | 0.899032 |
Target: 5'- gGGAGGaCC-CGCGGGCCACGUcgggcugcuGCCg- -3' miRNA: 3'- -CCUCUcGGcGUGUCUGGUGCA---------CGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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